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Sample GSM1887769 Query DataSets for GSM1887769
Status Public on Oct 17, 2017
Title Vehicle 4hr III
Sample type RNA
 
Source name Primary adult human keratinocytes
Organism Homo sapiens
Characteristics type: Primary cell (Human Keratinocyte)
treatment: DMSO for 4hrs
tissue: epidermis
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing The data were normalised using quantile normalisation with MatLab
 
Submission date Sep 17, 2015
Last update date Oct 17, 2017
Contact name ajay Mishra
E-mail(s) ajay.mishra@kcl.ac.uk
Organization name King's College London
Department Centre for Stem Cells and Regenerative Medicine
Street address Great Maze Pond
City London
ZIP/Postal code SE1 9RT
Country United Kingdom
 
Platform ID GPL10904
Series (1)
GSE73147 A protein phosphatase network controls the temporal and spatial dynamics of differentiation commitment in human epidermis

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
7A5 29.3 0.2
A1BG 11.2 0.33897
A1CF 7.7 0.32443
A26C3 8.9 0.4167
A2BP1 -15.2 0.83553
A2LD1 324.6 0
A2M -34 0.81818
A2ML1 1187 0
A3GALT2 18.4 0.21507
A4GALT 162.3 0
A4GNT 10.8 0.42727
AAA1 7.5 0.32177
AAAS 49.9 0.06234
AACS 194.2 0
AACSL 89.8 0.00779
AADAC 34 0.16234
AADACL1 296.8 0
AADACL2 23.8 0.25065
AADACL3 6.1 0.48312
AADACL4 -37.6 0.84675

Total number of rows: 34685

Table truncated, full table size 679 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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