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Sample GSM1887771 Query DataSets for GSM1887771
Status Public on Oct 17, 2017
Title Vehicle 12hr I
Sample type RNA
 
Source name Primary adult human keratinocytes
Organism Homo sapiens
Characteristics type: Primary cell (Human Keratinocyte)
treatment: DMSO for 12hrs
tissue: epidermis
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalisation with MatLab
 
Submission date Sep 17, 2015
Last update date Oct 17, 2017
Contact name ajay Mishra
E-mail(s) ajay.mishra@kcl.ac.uk
Organization name King's College London
Department Centre for Stem Cells and Regenerative Medicine
Street address Great Maze Pond
City London
ZIP/Postal code SE1 9RT
Country United Kingdom
 
Platform ID GPL10904
Series (1)
GSE73147 A protein phosphatase network controls the temporal and spatial dynamics of differentiation commitment in human epidermis

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
7A5 25 0.26104
A1BG 2.6 0.54937
A1CF 15.4 0.2433
A26C3 4.6 0.47372
A2BP1 -24.9 0.91945
A2LD1 105.9 0
A2M -48.1 0.92338
A2ML1 6524.4 0
A3GALT2 33.2 0.0685
A4GALT 512 0
A4GNT 29.7 0.21818
AAA1 11.7 0.30537
AAAS 8.8 0.46364
AACS 232.1 0
AACSL 68.1 0.03117
AADAC 43.4 0.11558
AADACL1 281 0
AADACL2 24.5 0.26494
AADACL3 0.4 0.56364
AADACL4 -29.9 0.7987

Total number of rows: 34685

Table truncated, full table size 677 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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