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Sample GSM1887791 Query DataSets for GSM1887791
Status Public on Oct 17, 2017
Title Vehicle 12hr III
Sample type RNA
 
Source name Primary adult human keratinocytes
Organism Homo sapiens
Characteristics type: Primary cell (Human Keratinocyte)
treatment: DMSO for 12hrs
tissue: epidermis
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing The data were normalised using quantile normalisation with MatLab
 
Submission date Sep 17, 2015
Last update date Oct 17, 2017
Contact name ajay Mishra
E-mail(s) ajay.mishra@kcl.ac.uk
Organization name King's College London
Department Centre for Stem Cells and Regenerative Medicine
Street address Great Maze Pond
City London
ZIP/Postal code SE1 9RT
Country United Kingdom
 
Platform ID GPL10904
Series (1)
GSE73147 A protein phosphatase network controls the temporal and spatial dynamics of differentiation commitment in human epidermis

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
7A5 47.4 0.05584
A1BG 26.9 0.07896
A1CF -3.1 0.60048
A26C3 4.3 0.31815
A2BP1 -28.4 0.95178
A2LD1 119.5 0
A2M -26.3 0.75195
A2ML1 6183.2 0
A3GALT2 10.8 0.30157
A4GALT 500.8 0
A4GNT 11.2 0.38961
AAA1 4.4 0.2921
AAAS 47.5 0.05584
AACS 206.1 0
AACSL 98.3 0
AADAC 22.9 0.23896
AADACL1 357.9 0
AADACL2 32.2 0.15065
AADACL3 9.2 0.41299
AADACL4 -0.2 0.53247

Total number of rows: 34685

Table truncated, full table size 675 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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