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| Status |
Public on Sep 25, 2018 |
| Title |
eye rear (left) |
| Sample type |
SRA |
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| Source name |
Eye
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| Organism |
Cyprinus carpio |
| Characteristics |
tissue: Eye
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA Later
RNA libraries were prepared for sequencing using standard Illumina protocols
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
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| Description |
Common Carp Sample 4
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| Data processing |
Illumina software used for basecalling.
tophat 2.0.5
htsec count
Genome_build: ASM127010v1 [GenBank assembly accession: GCA_001270105.1 & WGS Project: LHQP01]
Supplementary_files_format_and_content: Tab-delimited .tsv file for each Sample lists gene identifiers and raw counts. For the gene identifiers' sequences, refer to the .gff linked as a supplementary file on the Series record. The contigs listed in the .gff can be found at GenBank: LHQP00000000.1 (associated with BioProject PRJNA73579).
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| Submission date |
Sep 25, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Christiaan Henkel |
| E-mail(s) |
c.v.henkel@biology.leidenuniv.nl
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| Organization name |
University Leiden
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| Department |
Institute of Biology
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| Street address |
Sylviusweg 72
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| City |
Leiden |
| ZIP/Postal code |
2333 BE |
| Country |
Netherlands |
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| Platform ID |
GPL20956 |
| Series (1) |
| GSE73429 |
Cyprinus carpio RNA-seq in multiple tissues |
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| Relations |
| BioSample |
SAMN04112441 |
| SRA |
SRX1287617 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1893493_4_fix.tsv.gz |
181.0 Kb |
(ftp)(http) |
TSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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