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Sample GSM1902052 Query DataSets for GSM1902052
Status Public on Aug 03, 2016
Title Sample 54 Adult Brain (Frontal) - Trisomy
Sample type genomic
 
Source name Adult Brain (Frontal) - Trisomy
Organism Homo sapiens
Characteristics tissue: frontal adult brain
disease state: trisomy
gender: female
gestational.week: NA
adult.age: 23
Extracted molecule genomic DNA
Extraction protocol Standard Illumina Protocol
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 BeadChip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing R (version 3.2.0) and Bioconductor (version 3.1)
 
Submission date Oct 05, 2015
Last update date Aug 03, 2016
Contact name Marcus Dittrich
Organization name University of Würzburg
Department Biozentrum
Street address Biozentrum, Am Hubland
City Würzburg
ZIP/Postal code 97074
Country Germany
 
Platform ID GPL13534
Series (1)
GSE73747 Epigenetic Dysregulation in the Developing Down Syndrome Brain

Data table header descriptions
ID_REF
VALUE Normalized (SWAN: Subset-quantile Within Array Normalization) Beta values
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg13869341 0.856218669919735 0
cg14008030 0.677524065322621 0
cg12045430 0.0589847527851163 0
cg20826792 0.215670558083163 0
cg00381604 0.0461212126446843 0
cg20253340 0.548446321722706 0
cg21870274 0.755088406825432 0
cg03130891 0.0681045425419773 0
cg24335620 0.802105861148658 0
cg16162899 0.914654193135097 0
cg17149495 0.830664665694643 0
cg22802167 0.868529781266154 0
cg24669183 0.825298157562786 0
cg17308840 0.355211941244029 0
cg17866181 0.930487222789986 0
cg24159721 0.161108947935866 0
cg15174812 0.172248384813465 0
cg08477687 0.713883875922843 0
cg00034556 0.230612358710961 0
cg00645010 0.0819793930606405 0

Total number of rows: 465572

Table truncated, full table size 14172 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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