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Sample GSM1904298 Query DataSets for GSM1904298
Status Public on Jun 02, 2017
Title Sorted Gr-1intermediate/Mac-1+ CEBPe-KO replicate 2
Sample type RNA
 
Source name Sorted Gr-1intermediate/Mac-1+ cells
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: CEBPe KO
cell type: Sorted primary Gr-1 intermediate/Mac-1+ bone marrow cells
Growth protocol sorted primary C57BL/6 (WT and CEBPe KO) bone marrow cells without culture
Extracted molecule total RNA
Extraction protocol Rneasy Kit (Qiagen)
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing Data were normalized by applying control background correction, log transformation and inter-quantile normalization using the neqc function from the limma bioconductor package.
 
Submission date Oct 08, 2015
Last update date Jun 02, 2017
Contact name Touati Benoukraf
E-mail(s) tbenoukraf@mun.ca
Phone +1 (709) 864-6671
Organization name Memorial University of Newfoundland
Department Faculty of Medicine, Division of BioMedical Sciences
Street address Craig L. Dobbin Genetics Research Centre,
City St. John's
State/province NL
ZIP/Postal code A1B 3V6
Country Canada
 
Platform ID GPL6887
Series (2)
GSE73835 The effect of C/EBPepsilon in differentiated granulocytes: cDNA microarray of C/EBPepsilon knock out mice vs C57BL/6 mice bone marrow cells
GSE73860 Landscape of CEBPe target genes in mouse bone marrow

Data table header descriptions
ID_REF
VALUE Quantile normalized

Data table
ID_REF VALUE
ILMN_1243094 4.256737
ILMN_1238674 4.304269
ILMN_2454720 4.237035
ILMN_3062534 4.61255
ILMN_3140158 8.287077
ILMN_1240307 4.321252
ILMN_1251139 4.466606
ILMN_2935307 4.194469
ILMN_2429159 4.373939
ILMN_2754227 4.924348
ILMN_1225693 4.277966
ILMN_1234015 4.244384
ILMN_2603725 12.928354
ILMN_2664884 5.169152
ILMN_1229397 4.168115
ILMN_1225873 4.244384
ILMN_3003575 4.256737
ILMN_1257702 10.943989
ILMN_2899591 7.246859
ILMN_2658355 4.287951

Total number of rows: 45281

Table truncated, full table size 968 Kbytes.




Supplementary file Size Download File type/resource
GSM1904298_8546243083_F_Grn.idat.gz 2.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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