|
Status |
Public on Sep 15, 2016 |
Title |
Selkup078 [GRC11056570] |
Sample type |
genomic |
|
|
Source name |
North West Siberia_Selkup
|
Organism |
Homo sapiens |
Characteristics |
population: Selkup region: North West Siberia gender: Male tissue: blood
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Extraction of genomic DNA from blood was performed using standard extraction protocols.
|
Label |
biotin
|
Label protocol |
Standard Affymetrix procedures
|
|
|
Hybridization protocol |
Standard Affymetrix procedures
|
Scan protocol |
Standard Affymetrix procedures
|
Description |
Genomic DNA extracted from blood was genotyped using Affymetrix platform
|
Data processing |
Affymetrix Power Tools (APT) Software Package (version 1.12.0) has been used for data analysis. Application 'apt-probeset-genotype' has been used for making genotype calls. Processed data (along with sample metadata) is provided for each sample (*alleles_affy.txt). Processed data include genotype data for each rs number; #ID_REF = Affymetrix probe set ID #VALUE = Genotype Call #RS_NUMBER = dbSNP_RS_ID Dataset is also converted into PLINK format (http://pngu.mgh.harvard.edu/~purcell/plink/). Files SIBERIA.bed, SIBERIA.bim, SIBERIA.fam are provided.
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|
|
Submission date |
Oct 14, 2015 |
Last update date |
Sep 15, 2016 |
Contact name |
Tatiana M. Karafet |
E-mail(s) |
tkarafet@email.arizona.edu
|
Phone |
520-626-0404
|
Organization name |
University of Arizona
|
Department |
ARL
|
Lab |
Michael Hammer's Research Group
|
Street address |
BSW #246, 1041 E Lowell Str.
|
City |
Tucson |
State/province |
AZ |
ZIP/Postal code |
85721 |
Country |
USA |
|
|
Platform ID |
GPL18441 |
Series (1) |
GSE73996 |
The genetic basis of adaptation to climatic stress in Siberian indigenous populations |
|