|
| Status |
Public on Sep 15, 2016 |
| Title |
Kazakh158 [GRC10041336] |
| Sample type |
genomic |
| |
|
| Source name |
Central Asia_Kazakh
|
| Organism |
Homo sapiens |
| Characteristics |
population: Kazakh
region: Central Asia
gender: Male
tissue: blood
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extraction of genomic DNA from blood was performed using standard extraction protocols.
|
| Label |
biotin
|
| Label protocol |
Standard Affymetrix procedures
|
| |
|
| Hybridization protocol |
Standard Affymetrix procedures
|
| Scan protocol |
Standard Affymetrix procedures
|
| Description |
Genomic DNA extracted from blood was genotyped using Affymetrix platform
|
| Data processing |
Affymetrix Power Tools (APT) Software Package (version 1.12.0) has been used for data analysis. Application 'apt-probeset-genotype' has been used for making genotype calls.
Processed data (along with sample metadata) is provided for each sample (*alleles_affy.txt). Processed data include genotype data for each rs number;
#ID_REF = Affymetrix probe set ID
#VALUE = Genotype Call
#RS_NUMBER = dbSNP_RS_ID
Dataset is also converted into PLINK format (http://pngu.mgh.harvard.edu/~purcell/plink/). Files SIBERIA.bed, SIBERIA.bim, SIBERIA.fam are provided.
|
| |
|
| Submission date |
Oct 14, 2015 |
| Last update date |
Sep 15, 2016 |
| Contact name |
Tatiana M. Karafet |
| E-mail(s) |
tkarafet@email.arizona.edu
|
| Phone |
520-626-0404
|
| Organization name |
University of Arizona
|
| Department |
ARL
|
| Lab |
Michael Hammer's Research Group
|
| Street address |
BSW #246, 1041 E Lowell Str.
|
| City |
Tucson |
| State/province |
AZ |
| ZIP/Postal code |
85721 |
| Country |
USA |
| |
|
| Platform ID |
GPL18441 |
| Series (1) |
| GSE73996 |
The genetic basis of adaptation to climatic stress in Siberian indigenous populations |
|
