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Sample GSM192340

Query DataSets for GSM192340

Status

Public on May 25, 2007

Title

P3_AS_HepG2_RNuP+_C52_B1

Sample type

RNA

Source name

Total Nuclear RNA from HepG2 cell line

Organism

Homo sapiens

Characteristics

See publication for details

Biomaterial provider

NCI

Extracted molecule

polyA RNA

Extraction protocol

Long RNA protocol - see publication for details

Label

biotin

Label protocol

See publication for details

Hybridization protocol

See publication for details

Scan protocol

See publication for details

Description

See publication for details

Data processing

See publication for details

Submission date

May 23, 2007

Last update date

Aug 02, 2007

Contact name

Thomas R Gingeras

E-mail(s)

tom_gingeras@affymetrix.com

Organization name

Affymetrix, Inc.

Street address

3380 Central Expressway

City

Santa Clara

State/province

ZIP/Postal code

95051

Country

USA

Platform ID

GPL5285

Series (1)

GSE7576

RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID_REF	CHIP_COORD_GENOMIC_COORD
VALUE	intensity
ABS_CALL	present/absent call

Data table
ID_REF	VALUE	ABS_CALL
x703_y11_chr10_2701088	12.5	A
x2146_y2111_chr10_5231259	-15	A
x1199_y2481_chr10_5231264	-19.5	A
x2512_y2533_chr10_5336422	123	A
x1832_y911_chr10_5336614	332.5	A
x845_y1113_chr10_5336619	332.5	A
x1150_y1887_chr10_5336699	111.25	A
x2398_y1111_chr10_5336704	111.5	A
x905_y649_chr10_5336709	110.5	A
x1264_y1065_chr10_5336714	112.5	A
x2362_y247_chr10_13140226	142	A
x1778_y637_chr10_13140231	176.875	A
x1080_y1189_chr10_13140236	215	A
x1118_y851_chr10_13140241	228	A
x1979_y199_chr10_13140527	32.875	A
x278_y1013_chr10_13140532	32.625	A
x855_y2367_chr10_13140537	32.5	A
x1768_y2117_chr10_13140542	32.125	A
x518_y1453_chr10_13390411	-5	A
x607_y695_chr10_15175262	124.5	A

Total number of rows: 3021142

Table truncated, full table size 90065 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM192340_1.CEL.bz2	21.8 Mb	(ftp)(http)	CEL
GSM192340_2.CEL.bz2	20.9 Mb	(ftp)(http)	CEL
GSM192340_3.CEL.bz2	21.0 Mb	(ftp)(http)	CEL
Processed data provided as supplementary file