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Sample GSM1928 Query DataSets for GSM1928
Status Public on Jun 27, 2002
Title HMEC X NB2
Sample type RNA
 
Channel 1
Source name HMEC
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NB@ (pooled2)
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: HMEC
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators.
Scanning Software: unknown
Software version: unknown
Lot batch = 0374-5k
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL170
Series (1)
GSE53 Human mammary epithelium and breast cancer

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1022 139 585 103 482 337 72 409 .11 0 -.948 0 0 1.35 1.93 .741 .518 .21 20 30 88 98 -.948
2 1037 157 623 142 481 336 99 436 .21 0 -.661 0 0 1.106 1.581 .904 .632 .37 19 29 537 547 -.661
3 1030 117 588 119 469 328 83 411 .05 0 -.492 0 0 .983 1.406 1.017 .711 .07 20 30 97 107 -.492
4 1042 130 623 115 508 355 80 436 .25 0 -.693 0 0 1.13 1.617 .885 .619 .39 19 29 546 556 -.693
5 1040 121 580 102 478 334 71 406 -.04 0 -.762 0 0 1.186 1.696 .843 .589 -.05 20 30 107 117 -.762
6 1042 124 621 104 517 362 73 434 .1 0 -.77 0 0 1.192 1.705 .839 .587 .15 19 29 556 566 -.77
7 1046 123 572 106 466 326 74 400 -.06 0 -.731 0 0 1.16 1.659 .862 .603 -.08 20 30 117 127 -.731
8 1023 127 633 117 516 361 82 443 -.05 0 -.634 0 0 1.085 1.552 .921 .644 -.07 19 29 566 576 -.634
9 1051 121 576 114 462 323 80 403 .4 0 -.602 0 0 1.061 1.518 .942 .659 .84 20 30 127 137 -.602
10 1058 97 615 112 503 352 78 430 0 0 -.309 0 0 .866 1.238 1.155 .807 0 19 29 576 586 -.309
11 1034 108 578 100 478 334 70 404 -.22 0 -.627 0 0 1.08 1.544 .926 .648 -.31 20 30 137 147 -.627
12 1064 113 620 110 510 357 77 434 .08 0 -.555 0 0 1.027 1.469 .973 .681 .14 19 29 586 596 -.555
13 1184 120 598 168 430 301 117 418 .34 0 -.031 0 0 .714 1.021 1.4 .979 .23 471 481 90 100 -.031
14 1174 182 598 168 430 301 117 418 .86 0 -.631 0 0 1.083 1.549 .923 .646 1.35 466 476 540 550 -.631
15 1158 118 538 124 414 290 87 376 .1 0 -.444 0 0 .952 1.361 1.051 .735 .15 471 481 99 109 -.444
16 1178 138 570 127 443 310 89 399 .38 0 -.636 0 0 1.087 1.554 .92 .644 .57 466 476 549 559 -.636
17 1147 121 518 95 423 296 66 362 .09 0 -.865 0 0 1.274 1.821 .785 .549 .15 471 481 109 119 -.865
18 1123 161 553 148 405 283 103 387 .39 0 -.637 0 0 1.088 1.556 .919 .643 .62 466 476 559 569 -.637
19 1179 113 521 96 425 297 67 364 -.07 0 -.751 0 0 1.177 1.683 .85 .594 -.14 471 481 119 129 -.751
20 1150 116 543 103 440 308 72 380 .16 0 -.687 0 0 1.126 1.61 .888 .621 .26 466 476 569 579 -.687

Total number of rows: 5760

Table truncated, full table size 572 Kbytes.




Supplementary data files not provided

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