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Sample GSM1929 Query DataSets for GSM1929
Status Public on Jun 27, 2002
Title HMEC X MCF7-NCI
Sample type RNA
 
Channel 1
Source name HMEC
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name MCF7-NCI
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: HMEC
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators.
Scanning Software: unknown
Software version: unknown
Lot batch = 0376-5k
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL170
Series (1)
GSE53 Human mammary epithelium and breast cancer

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1551 147 626 101 525 525 101 626 .08 0 -.541 0 0 1.455 1.455 .687 .687 .1 16 26 85 95 -.541
2 1318 196 532 99 433 433 99 532 -.03 0 -.985 0 0 1.98 1.98 .505 .505 -.04 17 27 534 544 -.985
3 1571 176 606 125 481 481 125 606 .19 0 -.494 0 0 1.408 1.408 .71 .71 .25 16 26 94 104 -.494
4 1318 154 519 90 429 429 90 519 .13 0 -.775 0 0 1.711 1.711 .584 .584 .19 17 27 543 553 -.775
5 1535 190 610 115 495 495 115 610 .09 0 -.724 0 0 1.652 1.652 .605 .605 .12 16 26 104 114 -.724
6 1396 192 532 82 450 450 82 532 -.02 0 -1.227 0 0 2.341 2.341 .427 .427 -.04 17 27 553 563 -1.227
7 1513 191 599 95 504 504 95 599 -.03 0 -1.008 0 0 2.011 2.011 .497 .497 -.05 16 26 114 124 -1.008
8 1338 151 539 95 444 444 95 539 .1 0 -.669 0 0 1.589 1.589 .629 .629 .11 17 27 563 573 -.669
9 1558 224 612 106 506 506 106 612 .36 0 -1.079 0 0 2.113 2.113 .473 .473 .63 16 26 124 134 -1.079
10 1303 158 543 109 434 434 109 543 .04 0 -.536 0 0 1.45 1.45 .69 .69 .04 17 27 573 583 -.536
11 1514 258 592 111 481 481 111 592 .25 0 -1.217 0 0 2.324 2.324 .43 .43 .53 16 26 134 144 -1.217
12 1319 159 534 100 434 434 100 534 -.08 0 -.669 0 0 1.59 1.59 .629 .629 -.1 17 27 583 593 -.669
13 1518 198 466 104 362 362 104 466 .66 0 -.929 0 0 1.904 1.904 .525 .525 1.48 467 477 86 96 -.929
14 1386 273 617 220 397 397 220 617 .9 0 -.311 0 0 1.241 1.241 .806 .806 .74 463 473 535 545 -.311
15 1521 176 456 104 352 352 104 456 .19 0 -.759 0 0 1.692 1.692 .591 .591 .28 467 477 95 105 -.759
16 1337 201 521 129 392 392 129 521 .56 0 -.64 0 0 1.558 1.558 .642 .642 .61 463 473 544 554 -.64
17 1461 193 446 82 364 364 82 446 .06 0 -1.235 0 0 2.354 2.354 .425 .425 .12 467 477 105 115 -1.235
18 1388 202 511 101 410 410 101 511 .42 0 -1 0 0 2 2 .5 .5 .7 463 473 554 564 -1
19 1517 193 456 87 369 369 87 456 .12 0 -1.15 0 0 2.218 2.218 .451 .451 .23 467 477 115 125 -1.15
20 1392 168 495 82 413 413 82 495 .3 0 -1.035 0 0 2.049 2.049 .488 .488 .45 463 473 564 574 -1.035

Total number of rows: 5760

Table truncated, full table size 572 Kbytes.




Supplementary data files not provided

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