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Sample GSM1935 Query DataSets for GSM1935
Status Public on Jun 27, 2002
Title HMEC X HMEC + TGFbeta 24hrs
Sample type RNA
 
Channel 1
Source name control HMEC
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name HMEC + TGFbeta 24hrs
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: HMEC
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = 0119-5k
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL170
Series (1)
GSE53 Human mammary epithelium and breast cancer

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1616 1011 19 992 992 19 1011 .423 0 0 0 0 .148 47 55 53 61
2 1640 976 1000 1000 976 .533 0 0 0 0 .302 47 55 63 71
3 1648 989 1016 1016 989 .546 0 0 0 0 .29 47 55 73 81
4 1656 1043 19 1024 1024 19 1043 .549 0 0 1 0 .338 47 55 83 91
5 1664 1018 1032 1032 1018 .672 0 0 0 0 .657 47 55 94 102
6 1648 59 1058 34 1024 1024 34 1058 .471 0 -.795 0 0 1.735 1.735 .576 .576 .437 47 55 104 112 -.795
7 1680 990 1016 1016 990 .456 0 0 0 0 .404 47 55 114 122
8 1688 982 1016 1016 982 .118 0 0 0 0 .074 47 55 124 132
9 1696 9 1020 1024 1024 1020 .41 0 0 0 .333 47 55 135 143
10 1728 1057 25 1032 1032 25 1057 .406 0 0 3 0 .334 47 55 145 153
11 1712 8 1032 1040 1040 1032 .473 0 0 0 .398 47 55 155 163
12 1728 1006 1040 1040 1006 .45 0 0 0 0 .406 47 55 165 173
13 1704 618 1104 72 1032 1032 72 1104 .961 0 -3.102 5 1 8.583 8.583 .117 .117 .184 47 55 176 184 -3.102
14 1720 69 1046 6 1040 1040 6 1046 .459 0 -3.524 1 1 11.5 11.5 .087 .087 .353 47 55 186 194 -3.524
15 1736 1003 1032 1032 1003 .595 0 0 0 0 .488 47 55 196 204
16 1736 68 1043 11 1032 1032 11 1043 .673 0 -2.628 0 0 6.182 6.182 .162 .162 .607 47 55 207 215 -2.628
17 1752 993 1032 1032 993 .759 0 0 0 0 .791 47 55 217 225
18 1768 1022 1024 1024 1022 .778 0 0 0 0 .792 47 55 227 235
19 1768 53 1036 12 1024 1024 12 1036 .694 0 -2.143 0 0 4.417 4.417 .226 .226 .759 47 55 237 245 -2.143
20 1768 4 1026 2 1024 1024 2 1026 .686 0 -1 0 0 2 2 .5 .5 .798 47 55 248 256 -1

Total number of rows: 5760

Table truncated, full table size 522 Kbytes.




Supplementary data files not provided

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