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Sample GSM1937 Query DataSets for GSM1937
Status Public on Jun 27, 2002
Title HMEC X BC1498
Sample type RNA
 
Channel 1
Source name HMEC
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name BC1498
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: HMEC
Scanning Software: unknown
Software version: unknown
Lot batch = 0087-5k
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL170
Series (1)
GSE53 Human mammary epithelium and breast cancer

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 2021 180 1273 176 1097 1065 170 1235 .196 0 -.082 0 0 1.023 1.059 .978 .944 .231 8 18 73 82 -.082
2 1991 172 1229 182 1047 1016 177 1193 .051 0 .041 0 0 .945 .972 1.058 1.029 .045 8 18 82 91 .041
3 1990 219 1286 220 1066 1034 214 1248 .396 0 -.033 0 0 .995 1.023 1.005 .977 .294 8 18 92 101 -.033
4 1978 160 1182 146 1036 1005 142 1147 .34 0 -.172 0 0 1.096 1.127 .913 .888 .376 8 18 102 111 -.172
5 1965 188 1173 166 1007 977 161 1138 .047 0 -.224 0 0 1.133 1.168 .883 .856 .06 8 18 112 121 -.224
6 1974 190 1167 165 1002 972 161 1133 .089 0 -.239 0 0 1.152 1.18 .868 .847 .102 8 18 122 131 -.239
7 1963 218 1168 131 1037 1006 127 1133 .527 0 -.78 0 0 1.664 1.717 .601 .583 1.538 8 18 132 141 -.78
8 1929 204 1158 147 1011 981 143 1124 .075 0 -.513 0 0 1.388 1.427 .721 .701 .098 8 18 142 151 -.513
9 1926 202 1169 189 980 951 183 1134 .212 0 -.143 0 0 1.069 1.104 .936 .906 .163 8 18 152 161 -.143
10 1948 295 1273 243 1030 1000 235 1235 .709 0 -.328 0 0 1.214 1.255 .824 .797 .935 8 18 162 171 -.328
11 1958 196 1173 118 1055 1024 114 1138 -.001 0 -.782 0 0 1.661 1.719 .602 .582 -.002 8 18 172 181 -.782
12 1916 207 1164 148 1016 986 144 1130 .169 0 -.524 0 0 1.399 1.438 .715 .696 .216 8 18 182 191 -.524
13 1935 175 1135 147 988 959 142 1101 .105 0 -.301 0 0 1.19 1.232 .84 .811 .122 8 18 192 201 -.301
14 1808 230 1194 160 1034 1003 156 1159 -.124 0 -.56 0 0 1.438 1.474 .696 .678 -.156 8 18 202 211 -.56
15 1962 173 1167 159 1008 978 155 1133 -.021 0 -.159 0 0 1.088 1.116 .919 .896 -.024 8 18 212 221 -.159
16 1931 167 1153 159 994 965 154 1119 -.036 0 -.117 0 0 1.05 1.084 .952 .922 -.036 8 18 222 231 -.117
17 1942 170 1164 129 1035 1004 126 1130 .195 0 -.432 0 0 1.318 1.349 .759 .741 .277 8 18 232 241 -.432
18 1907 246 1207 170 1037 1006 165 1171 .436 0 -.576 0 0 1.447 1.491 .691 .671 .414 8 18 242 251 -.576
19 1876 274 1284 274 1010 980 266 1246 .716 0 -.043 0 0 1 1.03 1 .971 .678 8 18 252 261 -.043
20 1872 237 1173 151 1022 992 146 1138 .004 0 -.699 0 0 1.57 1.623 .637 .616 .005 8 18 262 271 -.699

Total number of rows: 5760

Table truncated, full table size 600 Kbytes.




Supplementary data files not provided

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