|
| Status |
Public on May 13, 2016 |
| Title |
UM_N03_Tumor |
| Sample type |
genomic |
| |
|
| Source name |
Head and neck squamous cell carcinoma
|
| Organism |
Homo sapiens |
| Characteristics |
turmor stage: IVa
gender: F
hpv-status: Neg
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
The tumor DNA was prepared using Qiagen AllPrep DNA/RNA/protein Mini Kit prep and the blood DNA was isolated using the Qiagen QIAamp Blood DNA Mini Kit.
|
| Label |
biotin(C,G) ; dinitrophenyl (A, T)
|
| Label protocol |
standard Illumina labelling protocol
|
| |
|
| Hybridization protocol |
standard Illumina hybridisation protocol
|
| Scan protocol |
standard Illumina scanning protocol for BeadChip Arrays
|
| Description |
BT21: UM_N03_Tumor
|
| Data processing |
The scanned data files were processed by GenomeStudio (Illumina) Genotyping Analysis Modulue (v1.9.4)
Genotype: AA, AB, BB or NC(no call)
|
| |
|
| Submission date |
Nov 12, 2015 |
| Last update date |
Jul 15, 2021 |
| Contact name |
Maureen Sartor |
| E-mail(s) |
sartorma@umich.edu
|
| Organization name |
University of Michigan
|
| Street address |
100 Washtenaw Ave.
|
| City |
Ann Abor |
| ZIP/Postal code |
48109 |
| Country |
USA |
| |
|
| Platform ID |
GPL18900 |
| Series (2) |
| GSE74949 |
Subtypes of HPV-positive head and neck cancers are associated with HPV characteristics, copy number variations, PIK3CA mutation, and pathway signatures. [SNP] |
| GSE74956 |
Subtypes of HPV-positive head and neck cancers are associated with HPV characteristics, copy number variations, PIK3CA mutation, and pathway signatures. |
|
