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Sample GSM1940951 Query DataSets for GSM1940951
Status Public on Jul 19, 2016
Title Patient_CODE1 - T0
Sample type RNA
 
Source name PBMCs
Organism Homo sapiens
Characteristics age: 28
tissue: PBMCs
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the QIAzol® Lysis Reagent, according to the manufacturer’s instructions. Quality control was performed with Biorad Experion.
Label biotin
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
9031313030 A
Data processing The data were normalised using quantile normalization (background was not subtracted) with Illumina Genome Studio Software; items with detection p values >0.001 or AVG Signal <120 in more than 1 group were excluded. Data were analyzed with non parametric analysis plus False Discovery Rate, FDR.
 
Submission date Nov 16, 2015
Last update date Jul 19, 2016
Contact name Antonio Moschetta
Organization name IRCCS Ospedale Oncologico di Bari
Street address Via Orazio Flacco, 65
City Bari
ZIP/Postal code 70124
Country Italy
 
Platform ID GPL10558
Series (2)
GSE75025 Gene expression profile of PBMCs in healthy subjects and MS Patients after extra virgin olive oil (EVOO) intake - Part 1 (Controls)
GSE75027 GE/miRNA expression profile of PBMCs in healthy subjects and MS patients after extra virgin olive oil (EVOO) intake

Data table header descriptions
ID_REF
VALUE Quantile Normalized AVG signal
9031313030_A.Detection Pval

Data table
ID_REF VALUE 9031313030_A.Detection Pval
ILMN_1762337 117.4469 0.05454545
ILMN_2055271 108.113 0.2116883
ILMN_1736007 101.6596 0.5
ILMN_2383229 106.2987 0.2753247
ILMN_1806310 105.8944 0.2883117
ILMN_1779670 109.518 0.1753247
ILMN_1653355 112.0131 0.1103896
ILMN_1717783 96.0795 0.7480519
ILMN_1705025 120.0958 0.03636364
ILMN_1814316 100.0353 0.5701299
ILMN_2359168 99.4734 0.6
ILMN_1731507 98.81362 0.6337662
ILMN_1787689 118.6078 0.04805195
ILMN_3241953 146.286 0.002597403
ILMN_1745607 98.75101 0.6402597
ILMN_2136495 100.6481 0.5467532
ILMN_1668111 93.90141 0.8311688
ILMN_2295559 92.7442 0.8688312
ILMN_1735045 93.08918 0.8571429
ILMN_1680754 132.9134 0.005194805

Total number of rows: 47305

Table truncated, full table size 1389 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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