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Sample GSM1940954 Query DataSets for GSM1940954
Status Public on Jul 19, 2016
Title Patient_CODE4 - T0
Sample type RNA
 
Source name PBMCs
Organism Homo sapiens
Characteristics age: 27
tissue: PBMCs
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the QIAzol® Lysis Reagent, according to the manufacturer’s instructions. Quality control was performed with Biorad Experion.
Label biotin
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
6062739174 E
Data processing The data were normalised using quantile normalization (background was not subtracted) with Illumina Genome Studio Software; items with detection p values >0.001 or AVG Signal <120 in more than 1 group were excluded. Data were analyzed with non parametric analysis plus False Discovery Rate, FDR.
 
Submission date Nov 16, 2015
Last update date Jul 19, 2016
Contact name Antonio Moschetta
Organization name IRCCS Ospedale Oncologico di Bari
Street address Via Orazio Flacco, 65
City Bari
ZIP/Postal code 70124
Country Italy
 
Platform ID GPL10558
Series (2)
GSE75025 Gene expression profile of PBMCs in healthy subjects and MS Patients after extra virgin olive oil (EVOO) intake - Part 1 (Controls)
GSE75027 GE/miRNA expression profile of PBMCs in healthy subjects and MS patients after extra virgin olive oil (EVOO) intake

Data table header descriptions
ID_REF
VALUE Quantile Normalized AVG signal
6062739174_E.Detection Pval

Data table
ID_REF VALUE 6062739174_E.Detection Pval
ILMN_1762337 108.2363 0.2363636
ILMN_2055271 91.9194 0.9142857
ILMN_1736007 99.8553 0.6038961
ILMN_2383229 95.46255 0.8
ILMN_1806310 93.34106 0.8753247
ILMN_1779670 93.13749 0.8805195
ILMN_1653355 99.53396 0.6103896
ILMN_1717783 97.10781 0.7376623
ILMN_1705025 110.2324 0.1896104
ILMN_1814316 104.5638 0.387013
ILMN_2359168 105.997 0.3194805
ILMN_1731507 91.65873 0.9233766
ILMN_1787689 93.0445 0.8818182
ILMN_3241953 149.9347 0
ILMN_1745607 100.9942 0.5493507
ILMN_2136495 94.33295 0.848052
ILMN_1668111 90.94705 0.9441559
ILMN_2295559 91.81149 0.9194805
ILMN_1735045 105.2543 0.3558442
ILMN_1680754 132.2824 0.007792208

Total number of rows: 47305

Table truncated, full table size 1382 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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