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Sample GSM1943 Query DataSets for GSM1943
Status Public on Jun 27, 2002
Title HMEC X BC21
Sample type RNA
 
Channel 1
Source name HMEC
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name BC21
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: HMEC
Scanning Software: unknown
Software version: unknown
Lot batch = 0130-5k
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL170
Series (1)
GSE53 Human mammary epithelium and breast cancer

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1622 199 3409 447 2962 3219 486 3705 .728 0 1.288 0 0 .445 .409 2.246 2.442 .298 15 25 59 68 1.288
2 1622 178 3358 377 2981 3240 410 3650 -.137 0 1.204 0 0 .472 .434 2.118 2.303 -.058 15 25 68 77 1.204
3 1655 187 3412 377 3035 3298 410 3708 -.053 0 1.133 0 0 .496 .456 2.016 2.193 -.029 15 25 78 87 1.133
4 1631 168 3357 365 2992 3252 396 3648 .059 0 1.237 0 0 .46 .424 2.173 2.357 .028 15 25 88 97 1.237
5 1592 202 3400 362 3038 3302 393 3695 .062 0 .96 0 0 .558 .514 1.792 1.946 .037 15 25 98 107 .96
6 1612 263 3682 587 3095 3364 638 4002 .584 0 1.278 0 0 .448 .412 2.232 2.426 .278 15 25 108 117 1.278
7 1613 190 3377 415 2962 3219 451 3670 .005 0 1.247 0 0 .458 .421 2.184 2.374 .002 15 25 118 127 1.247
8 1620 206 3461 457 3004 3265 496 3761 .403 0 1.268 0 0 .451 .415 2.218 2.408 .282 15 25 128 137 1.268
9 1614 163 3363 324 3039 3303 352 3655 .038 0 1.111 0 0 .503 .463 1.988 2.16 .019 15 25 138 147 1.111
10 1607 320 3662 517 3145 3418 562 3980 .657 0 .812 0 0 .619 .569 1.616 1.756 .422 15 25 148 157 .812
11 1630 193 3502 442 3060 3326 480 3806 .107 0 1.314 0 0 .437 .402 2.29 2.487 .05 15 25 158 167 1.314
12 1577 180 3476 394 3082 3350 428 3778 .069 0 1.25 0 0 .457 .421 2.189 2.378 .029 15 25 168 177 1.25
13 1595 167 3462 405 3057 3322 441 3763 .105 0 1.401 0 0 .412 .379 2.425 2.641 .049 15 25 178 187 1.401
14 1533 170 3511 443 3068 3334 482 3816 .01 0 1.503 0 0 .384 .353 2.606 2.835 .004 15 25 188 197 1.503
15 1604 176 3469 365 3104 3373 397 3770 .034 0 1.174 0 0 .482 .443 2.074 2.256 .016 15 25 198 207 1.174
16 1593 171 3421 358 3063 3329 389 3718 -.027 0 1.186 0 0 .478 .44 2.094 2.275 -.014 15 25 208 217 1.186
17 1589 170 3422 379 3043 3307 412 3719 .062 0 1.277 0 0 .449 .413 2.229 2.424 .025 15 25 218 227 1.277
18 1608 151 3410 358 3052 3317 389 3706 .01 0 1.365 0 0 .422 .388 2.371 2.576 .004 15 25 228 237 1.365
19 1571 174 3536 398 3138 3410 433 3843 .082 0 1.315 0 0 .437 .402 2.287 2.489 .037 15 25 238 247 1.315
20 1572 172 3553 413 3140 3413 448 3861 -.13 0 1.381 0 0 .416 .384 2.401 2.605 -.054 14 24 248 257 1.381

Total number of rows: 5760

Table truncated, full table size 601 Kbytes.




Supplementary data files not provided

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