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Sample GSM1956 Query DataSets for GSM1956
Status Public on Jun 27, 2002
Title OCI Ly10
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name OCI Ly10
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Hematopoetic cell lines
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc5b004
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL174
Series (1)
GSE60 Diffuse large B-cell lymphoma

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 361 120 1204 1455 1400 300 55 49 1250 1299 .962 0 .054 1.148 95 95 .86 .963 1.163 1.038 1.144 990 225 113 130 74 91 .054
2 130 105 967 537 495 68 42 38 442 480 .899 0 -1.129 .515 73 77 1.954 2.188 .512 .457 .487 720 225 113 130 91 108 -1.129
3 123 103 958 982 940 65 42 38 839 877 .953 0 -.191 .989 74 76 1.019 1.141 .981 .876 .943 720 225 113 130 109 126 -.191
4 185 106 1511 1244 1201 72 43 38 1073 1111 .969 0 -.495 .791 76 79 1.258 1.409 .795 .71 .788 720 225 113 130 126 143 -.495
5 229 109 5045 259 217 61 42 38 194 231 0 0 -4.702 .044 83 70 23.249 26.034 .043 .038 0 720 225 113 130 144 161 -4.702
6 180 103 1927 825 785 44 40 36 701 737 .93 0 -1.459 .435 77 82 2.455 2.749 .407 .364 .385 730 225 113 130 161 178 -1.459
7 103 101 739 409 370 43 39 35 330 365 .964 0 -1.161 .479 72 76 1.997 2.237 .501 .447 .509 746 225 113 130 179 196 -1.161
8 123 102 290 466 424 75 42 38 379 416 .935 0 .385 1.421 63 76 .684 .766 1.462 1.306 1.402 756 225 113 130 196 213 .385
9 133 101 978 1504 1460 93 44 39 1304 1343 .955 0 .415 1.448 71 78 .67 .75 1.493 1.333 1.407 756 225 113 130 214 231 .415
10 141 102 1694 2178 2131 105 47 42 1903 1945 .959 0 .168 1.255 72 75 .795 .89 1.258 1.123 1.2 756 225 113 130 231 248 .168
11 139 102 692 929 883 98 46 41 789 830 .953 0 .188 1.285 68 74 .784 .878 1.276 1.139 1.232 766 225 113 130 249 266 .188
12 131 101 1155 1323 1276 83 47 42 1139 1181 .962 0 -.02 1.117 75 83 .905 1.014 1.105 .987 1.074 720 225 114 131 266 283 -.02
13 139 102 1866 2668 2619 96 49 44 2339 2383 .974 0 .326 1.409 76 80 .712 .798 1.404 1.253 1.39 720 225 114 131 284 301 .326
14 142 104 998 1521 1471 111 50 45 1314 1358 .965 0 .396 1.474 73 77 .678 .76 1.474 1.316 1.423 720 225 114 131 301 318 .396
15 132 104 1295 1658 1605 102 53 47 1433 1481 .962 0 .146 1.268 73 83 .807 .904 1.239 1.107 1.169 735 225 114 131 319 336 .146
16 117 102 855 1801 1745 79 56 50 1558 1608 .952 0 .866 2.063 76 80 .49 .549 2.041 1.823 1.996 731 225 114 131 337 354 .866
17 120 101 2025 1737 1684 75 53 47 1504 1551 .973 0 -.429 .812 84 86 1.202 1.347 .832 .743 .807 745 225 114 131 354 371 -.429
18 126 98 1436 1660 1607 101 53 47 1435 1482 .963 0 -.001 1.106 81 83 .894 1.001 1.119 .999 1.099 756 225 114 131 372 389 -.001
19 129 100 1118 3610 3557 128 53 47 3176 3224 0 0 1.506 3.107 76 84 .314 .352 3.182 2.841 0 756 225 114 131 389 406 1.506
20 127 102 315 321 267 126 54 48 238 287 .85 0 -.402 .832 73 78 1.18 1.321 .848 .757 .716 756 225 114 131 407 424 -.402

Total number of rows: 9216

Table truncated, full table size 1074 Kbytes.




Supplementary data files not provided
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