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Sample GSM1959 Query DataSets for GSM1959
Status Public on Jun 27, 2002
Title DLCL-0036;OCT
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0036;OCT
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc4b013
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL174
Series (1)
GSE60 Diffuse large B-cell lymphoma

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 99 79 83 85 44 50 41 53 58 111 .764 0 -.517 .719 33 47 1.886 1.431 .53 .699 .335 1006 208 54 70 94 110 -.517
2 87 73 346 265 225 46 40 52 296 348 .939 0 -.225 .667 51 55 1.538 1.169 .65 .855 .58 795 208 53 69 111 127 -.225
3 75 66 463 260 224 40 36 47 295 342 .948 0 -.65 .494 62 65 2.067 1.569 .484 .637 .463 797 208 53 69 129 145 -.65
4 89 67 1098 568 532 45 36 47 700 747 .932 0 -.649 .508 68 67 2.064 1.569 .485 .638 .461 795 208 53 69 146 162 -.649
5 98 71 2365 3586 3548 57 38 50 4668 4718 0 0 .981 1.479 71 76 .667 .507 1.5 1.974 0 797 208 53 69 164 180 .981
6 89 70 474 433 396 53 37 48 521 569 .935 0 .136 .828 69 68 1.197 .91 .835 1.099 .775 795 208 53 69 181 197 .136
7 69 62 13 47 16 34 31 40 21 61 .562 0 .692 .762 18 32 .813 .619 1.231 1.615 .461 797 208 53 69 199 215 .692
8 63 57 101 137 108 32 29 38 142 180 .934 0 .492 1.029 40 59 .935 .711 1.069 1.406 .892 795 208 53 69 216 232 .492
9 65 55 415 436 406 35 30 39 534 573 .895 0 .364 .952 63 67 1.022 .777 .978 1.287 .844 797 208 53 69 234 250 .364
10 65 55 578 347 318 34 29 38 418 456 .907 0 -.468 .552 61 63 1.818 1.383 .55 .723 .479 795 208 53 69 251 267 -.468
11 62 51 379 215 187 33 28 36 246 282 .924 0 -.624 .471 58 63 2.027 1.541 .493 .649 .448 797 208 53 69 269 285 -.624
12 53 49 421 1685 1657 30 28 36 2181 2217 .965 0 2.373 3.806 64 72 .254 .193 3.936 5.181 3.766 795 208 53 69 286 302 2.373
13 57 51 420 2921 2891 38 30 39 3804 3843 0 0 3.179 6.596 60 75 .145 .11 6.883 9.057 0 811 208 53 69 304 320 3.179
14 70 54 336 476 444 50 32 42 584 626 .961 0 .798 1.287 61 65 .757 .575 1.321 1.738 1.246 799 208 53 69 322 338 .798
15 67 53 420 704 674 43 30 39 887 926 .947 0 1.079 1.522 61 73 .623 .474 1.605 2.112 1.453 795 208 53 69 339 355 1.079
16 51 47 319 213 188 28 25 32 248 280 .923 0 -.363 .58 69 75 1.697 1.286 .589 .777 .535 799 208 53 69 357 373 -.363
17 57 47 814 431 406 29 25 32 535 567 .958 0 -.605 .526 62 62 2.005 1.521 .499 .657 .471 795 208 53 69 374 390 -.605
18 59 47 703 468 444 28 24 31 584 615 .956 0 -.268 .642 70 73 1.583 1.204 .632 .831 .59 799 208 53 69 392 408 -.268
19 77 48 601 911 887 41 24 31 1167 1198 .954 0 .957 1.471 62 71 .678 .515 1.476 1.942 1.373 795 208 53 69 409 425 .957
20 77 48 160 374 351 42 23 30 462 492 .938 0 1.53 2.058 62 73 .456 .346 2.194 2.888 1.877 799 208 53 69 427 443 1.53

Total number of rows: 9216

Table truncated, full table size 1055 Kbytes.




Supplementary data files not provided
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