|
| Status |
Public on Dec 21, 2016 |
| Title |
Q0245A_blood |
| Sample type |
genomic |
| |
|
| Source name |
SLE_blood
|
| Organism |
Homo sapiens |
| Characteristics |
subject status: Systemic Lupus Erythematosus (SLE) patient
gender: female
ethnic background: chinese
tissue: blood
|
| Growth protocol |
EDTA-blood in 4oC refrigerator before DNA extraction
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted from whole blood using FlexiGene DNA Kit according to the manufacturer’s protocol (Qiagen). DNA samples were then bisulfite converted using the EpiTect Bisulfite Kit according to the manufacturer’s protocol (Qiagen)
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina labeling protocol
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina protocol using iScan
|
| Data processing |
Data were processed by Genome Studio Methylation Module V1.9.0 under default setting. Data matrix contains unmethylated (signal A) and methylated (signal B) signal intensities were provided (Intensities.txt).
Average Beta values are provided in the *txt file linked to each sample.
|
| |
|
| Submission date |
Dec 16, 2015 |
| Last update date |
Dec 21, 2016 |
| Contact name |
Brian Chung |
| E-mail(s) |
bhychung@hku.hk
|
| Organization name |
The University of Hong Kong
|
| Department |
Paediatrics and Adolescent Medicine
|
| Street address |
102 Pokfulam Road
|
| City |
Hong Kong |
| State/province |
Hong Kong |
| ZIP/Postal code |
852 |
| Country |
Hong Kong |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE76056 |
Genome-wide DNA methylation study in Chinese Systemic Lupus Erythematosus |
|
