NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1978 Query DataSets for GSM1978
Status Public on Jun 27, 2002
Title DLCL-0010 || lc4b053
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0010
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc4b053
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL174
Series (1)
GSE60 Diffuse large B-cell lymphoma

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 2046 1877 267 2463 45 2565 2418 2178 40 2218 .577 0 -2.739 1.153 24 10 5.933 6.675 .169 .15 .477 1143 37 12 19 78 85 -2.739
2 2067 1891 2204 8753 6308 2581 2445 2202 5683 7885 .605 0 1.367 2.453 62 67 .349 .388 2.862 2.578 1.444 1041 37 12 19 86 93 1.367
3 2027 1885 2453 2911 546 2467 2365 2130 492 2622 .473 0 -2.318 .246 62 21 4.493 4.986 .223 .201 .135 936 37 12 19 95 102 -2.318
4 1902 1755 1746 4187 2078 2166 2109 1900 1872 3772 .603 0 .101 1.297 62 67 .84 .933 1.19 1.072 .489 939 37 12 19 104 111 .101
5 1786 1627 1468 5988 4234 1803 1754 1580 3814 5394 .563 0 1.377 3.342 62 62 .347 .385 2.884 2.598 1.719 939 37 12 19 113 120 1.377
6 1825 1617 1463 3839 2169 1755 1670 1504 1954 3458 .61 0 .417 1.553 59 62 .675 .749 1.483 1.336 .841 942 37 12 19 122 129 .417
7 1844 1625 1144 1752 1689 1521 1030 .752 0 .165 10 2 0 .352 945 37 12 19 131 138
8 1938 1686 641 3935 1991 1961 1944 1751 1794 3545 .202 0 1.485 1.643 35 64 .322 .357 3.106 2.799 .206 948 37 12 19 140 147 1.485
9 2014 1790 7396 13316 11189 2174 2127 1916 10080 11996 0 0 .447 1.574 97 91 .661 .734 1.513 1.363 0 948 37 12 19 149 156 .447
10 2010 1775 16055 7920 5755 2281 2165 1950 5185 7135 0 0 -1.631 .373 97 83 2.79 3.096 .358 .323 0 948 37 12 19 158 165 -1.631
11 1908 1683 1325 3551 1458 2221 2093 1885 1314 3199 .428 0 -.012 1.165 67 62 .909 1.008 1.1 .992 .367 945 37 12 19 167 174 -.012
12 1817 1664 1590 5977 3945 2159 2032 1830 3554 5384 .364 0 1.16 2.498 62 67 .403 .447 2.481 2.235 .671 945 37 12 19 176 183 1.16
13 1789 1638 5960 11521 9514 2162 2007 1808 8571 10379 0 0 .524 1.39 81 89 .626 .695 1.596 1.438 0 948 37 12 19 184 191 .524
14 1795 1579 2212 7401 5409 2173 1992 1794 4873 6667 .688 0 1.139 2.594 72 91 .409 .454 2.445 2.203 1.267 951 37 12 19 193 200 1.139
15 1850 1562 6495 15678 13693 2179 1985 1788 12336 14124 0 0 .925 2.03 83 94 .474 .527 2.108 1.899 0 954 37 12 19 202 209 .925
16 1921 1532 9658 11835 9835 2289 2000 1801 8861 10662 0 0 -.124 .98 83 78 .982 1.09 1.018 .917 0 980 37 13 20 211 218 -.124
17 1964 1521 22507 16460 14475 2232 1985 1788 13040 14828 0 0 -.787 .636 89 83 1.555 1.726 .643 .579 0 980 37 13 20 220 227 -.787
18 1940 1526 12641 20561 18619 2187 1942 1749 16774 18523 0 0 .408 1.455 83 75 .679 .754 1.473 1.327 0 980 37 13 20 229 236 .408
19 1944 1545 13336 12169 10293 2128 1876 1690 9273 10963 0 0 -.524 .741 94 91 1.296 1.438 .772 .695 0 980 37 13 20 238 245 -.524
20 1785 1521 878 2849 1050 1988 1799 1620 946 2566 .184 0 .108 1.257 48 51 .836 .928 1.196 1.077 .157 983 37 13 20 247 254 .108

Total number of rows: 9216

Table truncated, full table size 1110 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap