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Sample GSM2020 Query DataSets for GSM2020
Status Public on Jun 27, 2002
Title U937
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name U937
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Hematopoetic cell lines
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n075
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 149 138 22 107 21 92 86 104 26 130 .444 0 .241 .697 23 26 1.048 .846 .955 1.182 .346 990 225 99 116 77 94 .241
2 147 137 187 214 128 93 86 104 156 260 .77 0 -.261 .726 53 49 1.461 1.199 .684 .834 .521 756 225 98 115 94 111 -.261
3 146 132 430 202 115 97 87 106 140 246 .721 0 -1.619 .344 61 53 3.739 3.071 .267 .326 .122 756 225 98 115 112 129 -1.619
4 149 131 597 973 884 97 89 108 1078 1186 .916 0 .853 1.423 62 63 .675 .554 1.481 1.806 1.289 756 225 98 115 129 146 .853
5 145 134 4045 321 237 90 84 102 289 391 0 0 -3.807 .066 71 64 17.068 13.997 .059 .071 0 756 225 98 115 147 164 -3.807
6 145 137 309 690 610 86 80 97 744 841 .825 0 1.268 1.739 64 68 .507 .415 1.974 2.408 1.529 746 225 98 115 164 181 1.268
7 146 136 725 2856 2775 87 81 98 3384 3482 .915 0 2.223 3.561 61 72 .261 .214 3.828 4.668 3.396 730 225 98 115 182 199 2.223
8 146 135 300 1068 988 88 80 97 1205 1302 .869 0 2.006 3.083 60 65 .304 .249 3.293 4.017 2.727 720 225 98 115 199 216 2.006
9 143 135 397 2285 2202 88 83 101 2685 2786 .894 0 2.758 5.556 68 74 .18 .148 5.547 6.763 4.681 766 225 97 114 217 234 2.758
10 145 139 255 712 629 89 83 101 767 868 .793 0 1.589 2.178 67 71 .405 .332 2.467 3.008 1.869 756 225 97 114 234 251 1.589
11 149 141 845 304 222 90 82 100 270 370 .847 0 -1.646 .273 65 65 3.806 3.13 .263 .32 .226 756 225 97 114 252 269 -1.646
12 142 131 449 490 407 90 83 101 496 597 .858 0 .144 .907 68 68 1.103 .905 .906 1.105 .792 756 225 97 114 269 286 .144
13 140 127 22 101 17 90 84 102 21 123 .249 0 -.067 .769 23 26 1.294 1.048 .773 .955 .154 771 225 97 114 287 304 -.067
14 140 128 183 204 117 91 87 106 142 248 .799 0 -.366 .62 51 48 1.564 1.289 .639 .776 .552 745 225 97 114 305 322 -.366
15 144 130 282 172 83 93 89 108 101 209 .786 0 -1.481 .319 56 46 3.398 2.792 .294 .358 .305 731 225 97 114 322 339 -1.481
16 143 132 370 679 594 91 85 103 725 828 .915 0 .97 1.385 48 53 .623 .51 1.605 1.959 1.524 720 225 97 114 340 357 .97
17 137 131 197 106 26 86 80 97 32 129 .336 0 -2.622 .283 43 32 7.577 6.156 .132 .162 .049 756 225 96 113 357 374 -2.622
18 134 127 148 364 283 85 81 98 345 443 .783 0 1.221 1.786 45 50 .523 .429 1.912 2.331 1.444 756 225 96 113 375 392 1.221
19 131 121 12 86 10 83 76 92 12 104 .083 0 0 .39 24 25 1.2 1 .833 1 .053 756 225 96 113 392 409 0
20 127 118 5 89 13 83 76 92 16 108 0 1.678 .613 20 24 .385 .313 2.6 3.2 766 225 96 113 410 427 1.678

Total number of rows: 18432

Table truncated, full table size 2181 Kbytes.




Supplementary data files not provided
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