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Sample GSM2024 Query DataSets for GSM2024
Status Public on Jun 27, 2002
Title FL-9;CD19+
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name FL-9;CD19+
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Follicular Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n009
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 65 61 12 238 33 223 205 320 51 371 .057 0 2.087 2.064 25 27 .364 .235 2.75 4.25 .137 1022 208 108 124 36 52 2.087
2 66 62 246 340 127 229 213 332 199 531 .657 0 -.306 .661 59 42 1.937 1.236 .516 .809 .441 789 208 107 123 53 69 -.306
3 71 65 629 447 227 234 220 343 355 698 .731 0 -.825 .406 66 57 2.771 1.772 .361 .564 .287 802 208 106 122 71 87 -.825
4 72 66 1144 705 479 240 226 353 748 1101 .875 0 -.613 .452 68 59 2.388 1.529 .419 .654 .421 787 208 106 122 88 104 -.613
5 68 65 4813 6769 6551 233 218 340 10236 10576 0 0 1.089 1.399 75 70 .735 .47 1.361 2.127 0 805 208 105 121 106 122 1.089
6 67 65 393 512 308 222 204 318 482 800 .785 0 .295 .897 63 60 1.276 .815 .784 1.226 .657 802 208 104 120 124 140 .295
7 71 63 1541 834 642 223 192 300 1003 1303 .891 0 -.62 .457 67 72 2.4 1.536 .417 .651 .367 787 208 104 120 141 157 -.62
8 68 58 563 549 352 227 197 307 550 857 .741 0 -.034 .635 71 61 1.599 1.024 .625 .977 .537 805 208 103 119 159 175 -.034
9 61 57 702 661 458 222 203 317 715 1032 .804 0 .026 .71 71 64 1.533 .982 .652 1.019 .547 777 208 103 119 177 193 .026
10 79 61 638 493 274 238 219 342 428 770 .733 0 -.576 .531 71 62 2.328 1.491 .429 .671 .406 801 208 102 118 194 210 -.576
11 81 62 1345 863 644 238 219 342 1006 1348 .875 0 -.419 .515 75 67 2.089 1.337 .479 .748 .427 816 208 101 117 212 228 -.419
12 64 60 1009 751 540 225 211 329 844 1173 .826 0 -.258 .557 75 66 1.869 1.195 .535 .836 .464 777 208 101 117 230 246 -.258
13 97 60 22 230 22 266 208 325 34 359 .269 0 .628 2.6 31 20 1 .647 1 1.545 .455 801 208 100 116 247 263 .628
14 99 62 369 366 158 268 208 325 246 571 .585 0 -.585 .437 69 53 2.335 1.5 .428 .667 .299 777 208 100 116 265 281 -.585
15 64 61 811 421 214 225 207 323 334 657 .712 0 -1.28 .298 73 56 3.79 2.428 .264 .412 .228 791 208 99 115 282 298 -1.28
16 70 59 1536 823 617 229 206 321 964 1285 .839 0 -.672 .417 76 70 2.489 1.593 .402 .628 .349 816 208 98 114 300 316 -.672
17 71 60 6168 8628 8420 222 208 325 13156 13481 0 0 1.093 1.36 81 79 .733 .469 1.365 2.133 0 777 208 98 114 318 334 1.093
18 67 61 513 594 388 219 206 321 607 928 .853 0 .243 .831 69 64 1.322 .845 .756 1.183 .698 801 208 97 113 335 351 .243
19 71 64 1852 928 726 219 202 315 1135 1450 .88 0 -.706 .397 66 63 2.551 1.632 .392 .613 .34 816 208 96 112 353 369 -.706
20 73 65 628 597 395 219 202 315 617 932 .779 0 -.025 .618 64 65 1.59 1.018 .629 .982 .507 777 208 96 112 371 387 -.025

Total number of rows: 18432

Table truncated, full table size 2186 Kbytes.




Supplementary data files not provided
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