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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 24, 2017 |
| Title |
dbl-1_50uM_heme_rep2 |
| Sample type |
SRA |
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| Source name |
whole animal
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| Organism |
Caenorhabditis elegans |
| Characteristics |
strain: NU3xN2
developmental stage: L4
genotype: dbl-1(nk3)
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| Extracted molecule |
polyA RNA |
| Extraction protocol |
RNA extraction protocol not provided.
RNA libraries were prepared for sequencing using standard Illumina protocols
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
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| Data processing |
Illumina Casava1.8.2 software used for basecalling.
Sequence reads were aligned using Tophat 2, version 2.1.0.
Cufflinks2, version 2.2.1, was used to calculate FPKM values.
Genome_build: ce10
Supplementary_files_format_and_content: Format: gzipped text file format, Content: FPKM value per gene
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| Submission date |
Dec 31, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Michael Krause |
| Organization name |
NIH/NIDDK
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| Lab |
Laboratory of Molecular Biology
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| Street address |
Bld. 5, Rm B104, 5 Memorial Dr.
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| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20814 |
| Country |
USA |
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| Platform ID |
GPL18245 |
| Series (1) |
| GSE76455 |
Long-range signaling at the neural-intestinal axis promotes organismal heme homeostasis |
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| Relations |
| BioSample |
SAMN04378670 |
| SRA |
SRX1510497 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2024980_dbl-1_50uM_heme_rep2.genes.fpkm_tracking.gz |
1.1 Mb |
(ftp)(http) |
FPKM_TRACKING |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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