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Sample GSM2025 Query DataSets for GSM2025
Status Public on Jun 27, 2002
Title FL-9
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name FL-9
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Follicular Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n088
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 141 135 93 177 109 71 68 80 130 210 .812 0 .483 1.076 33 37 .853 .715 1.172 1.398 .894 1119 177 92 107 76 91 .483
2 151 138 533 582 514 72 68 80 612 692 .902 0 .199 .873 56 61 1.037 .871 .964 1.148 .924 928 177 91 106 93 108 .199
3 156 144 123 133 64 73 69 82 76 158 .732 0 -.695 .545 36 41 1.922 1.618 .52 .618 .386 928 177 91 106 111 126 -.695
4 184 146 2151 1892 1819 93 73 86 2166 2252 .915 0 .01 .867 62 69 1.183 .993 .846 1.007 .761 906 177 91 106 128 143 .01
5 193 145 10410 21979 21902 130 77 91 26074 26165 0 0 1.325 2.108 83 92 .475 .399 2.104 2.505 0 909 177 91 106 146 161 1.325
6 158 139 1164 1773 1700 111 73 86 2024 2110 .919 0 .798 1.411 74 78 .685 .575 1.46 1.739 1.382 896 177 91 106 164 179 .798
7 146 138 180 248 175 78 73 86 209 295 .583 0 .216 .764 43 46 1.029 .861 .972 1.161 .556 928 177 90 105 181 196 .216
8 141 135 26 83 11 78 72 85 13 98 .053 0 -1 .42 20 21 2.364 2 .423 .5 .017 950 177 90 105 199 214 -1
9 149 135 2071 2420 2349 76 71 84 2796 2880 .896 0 .433 1.11 79 81 .882 .741 1.134 1.35 .999 918 177 90 105 217 232 .433
10 161 140 1791 1395 1324 81 71 84 1576 1660 .824 0 -.184 .768 85 85 1.353 1.136 .739 .88 .476 906 177 90 105 234 249 -.184
11 182 144 3909 3565 3493 102 72 85 4159 4244 0 0 .089 .877 81 85 1.119 .94 .894 1.064 0 906 177 90 105 252 267 .089
12 194 142 2760 2357 2284 118 73 86 2719 2805 .971 0 -.022 .806 84 83 1.208 1.015 .828 .985 .84 928 177 89 104 269 284 -.022
13 180 136 158 230 157 110 73 86 187 273 .92 0 .243 1.08 45 50 1.006 .845 .994 1.184 .872 941 177 89 104 287 302 .243
14 136 132 1056 1046 976 73 70 83 1162 1245 .924 0 .138 .897 72 74 1.082 .909 .924 1.1 .857 928 177 89 104 305 320 .138
15 145 133 1303 731 661 85 70 83 787 870 .935 0 -.727 .53 67 68 1.971 1.656 .507 .604 .495 906 177 89 104 322 337 -.727
16 145 133 92 143 71 84 72 85 85 170 .521 0 -.114 .592 25 28 1.296 1.082 .772 .924 .306 909 177 89 104 340 355 -.114
17 136 128 9 79 10 81 69 82 12 94 .422 0 .415 .852 12 19 .9 .75 1.111 1.333 .243 928 177 88 103 358 373 .415
18 135 131 19 96 29 70 67 79 35 114 .554 0 .881 .88 18 25 .655 .543 1.526 1.842 .736 928 177 88 103 375 390 .881
19 134 127 8 77 10 70 67 79 12 91 0 .585 .667 15 19 .8 .667 1.25 1.5 941 177 88 103 393 408 .585
20 177 130 364 153 85 76 68 80 102 182 .872 0 -1.835 .275 33 29 4.282 3.569 .234 .28 .197 905 177 88 103 411 426 -1.835

Total number of rows: 18432

Table truncated, full table size 2224 Kbytes.




Supplementary data files not provided
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