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Sample GSM2026 Query DataSets for GSM2026
Status Public on Jun 27, 2002
Title FL-12;CD19+
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name FL-12;CD19+
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Follicular Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n016
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 168 158 28 362 74 312 288 264 68 332 .308 0 1.279 1.676 24 28 .378 .412 2.643 2.426 .684 1022 208 72 88 23 39 1.279
2 176 164 388 952 679 302 273 251 623 874 .856 0 .684 1.83 62 66 .571 .622 1.75 1.607 1.509 789 208 71 87 40 56 .684
3 166 155 636 2082 1819 285 263 241 1670 1911 .887 0 1.393 2.706 65 64 .35 .381 2.86 2.626 2.432 777 208 71 87 58 74 1.393
4 161 153 1116 1036 777 275 259 238 713 951 .866 0 -.646 .741 67 66 1.436 1.565 .696 .639 .634 789 208 70 86 75 91 -.646
5 162 151 4201 17340 17073 284 267 245 15673 15918 0 0 1.9 3.783 74 75 .246 .268 4.064 3.731 0 777 208 70 86 93 109 1.9
6 159 150 504 1443 1178 284 265 243 1081 1325 .848 0 1.101 2.227 66 64 .428 .466 2.337 2.146 1.969 789 208 69 85 110 126 1.101
7 161 156 2028 3054 2797 276 257 236 2568 2804 .922 0 .34 1.387 67 69 .725 .79 1.379 1.266 1.253 791 208 69 85 128 144 .34
8 157 149 786 1027 765 279 262 241 702 943 .857 0 -.162 1.005 72 67 1.027 1.119 .973 .893 .881 802 208 68 84 146 162 -.162
9 154 149 890 977 727 269 250 230 667 897 .829 0 -.415 .854 68 70 1.224 1.334 .817 .75 .691 775 208 68 84 163 179 -.415
10 150 145 904 911 663 262 248 228 609 836 .81 0 -.571 .74 71 72 1.363 1.485 .733 .673 .618 791 208 67 83 181 197 -.571
11 156 146 1561 2765 2519 266 246 226 2312 2538 .886 0 .567 1.638 69 71 .62 .675 1.614 1.481 1.433 775 208 67 83 198 214 .567
12 163 152 1474 1788 1543 274 245 225 1417 1641 .852 0 -.057 1.078 71 74 .955 1.041 1.047 .961 .882 791 208 66 82 216 232 -.057
13 160 153 45 324 76 268 248 228 70 297 .57 0 .633 1.5 20 24 .592 .645 1.689 1.55 .902 787 208 66 82 233 249 .633
14 159 152 373 857 617 258 240 220 566 787 .834 0 .603 1.793 57 58 .605 .659 1.654 1.519 1.401 805 208 65 81 251 267 .603
15 158 150 666 2041 1814 251 227 208 1665 1874 .861 0 1.322 2.572 67 72 .367 .4 2.724 2.5 2.303 777 208 65 81 269 285 1.322
16 160 150 1224 921 695 252 226 207 638 845 .844 0 -.94 .59 62 67 1.761 1.918 .568 .521 .5 789 208 64 80 286 302 -.94
17 169 152 5802 20894 20660 263 234 215 18966 19181 0 0 1.709 3.45 71 82 .281 .306 3.561 3.269 0 777 208 64 80 304 320 1.709
18 165 150 663 1763 1526 266 237 218 1401 1618 .896 0 1.079 2.313 66 66 .434 .473 2.302 2.113 2.115 789 208 63 79 321 337 1.079
19 156 145 2308 3036 2807 248 229 210 2577 2787 .927 0 .159 1.216 71 66 .822 .896 1.216 1.116 1.14 777 208 63 79 339 355 .159
20 153 144 963 1149 931 235 218 200 855 1055 .82 0 -.172 .977 69 66 1.034 1.127 .967 .888 .815 801 208 62 78 356 372 -.172

Total number of rows: 18432

Table truncated, full table size 2253 Kbytes.




Supplementary data files not provided
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