|
| Status |
Public on Sep 12, 2007 |
| Title |
breast tumor - s1748 |
| Sample type |
RNA |
| |
|
| Source name |
TISSUE_ID s1748
|
| Organism |
Homo sapiens |
| Characteristics |
estrogen receptor (ER)+
progesterone receptor (PR)+
nodal_status: N0
age: 40
|
| Biomaterial provider |
Chew, K & Dairkee, SH
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen RNAesy purification from formamide extracted samples
|
| Label |
biotin
|
| Label protocol |
Affymetrix Gene Expression TP 21 (performed by HTArray Genomics Core Facility of Lawrence Berkeley National Laboratory)
|
| |
|
| Hybridization protocol |
Affymetrix Comm Hyb Setup 21 & Affymetrix Comm Wash Stain 21 (performed by HTArray Genomics Core Facility of Lawrence Berkeley National Laboratory)
|
| Scan protocol |
GeneChip HT Scanner protocol v2.2.09 (performed by HTArray Genomics Core Facility of Lawrence Berkeley National Laboratory)
|
| Description |
Gene expression data from ER+ N0 breast cancer from young cohort
|
| Data processing |
RMA normalization with affy package in Bioconductor R
|
| |
|
| Submission date |
Jun 20, 2007 |
| Last update date |
Aug 14, 2011 |
| Contact name |
Christina Yau |
| E-mail(s) |
cyau@buckinstitute.org
|
| Phone |
415-209-2248
|
| Organization name |
Buck Institute of Age Research
|
| Lab |
Benz Lab
|
| Street address |
8001 Redwood Blvd
|
| City |
Novato |
| State/province |
CA |
| ZIP/Postal code |
94945 |
| Country |
USA |
| |
|
| Platform ID |
GPL4685 |
| Series (1) |
| GSE8193 |
Expression data from age-dichotomized ER+ breast tumors |
|
