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Sample GSM2028 Query DataSets for GSM2028
Status Public on Jun 27, 2002
Title FL-11
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name FL-11
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Follicular Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n087
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 143 134 112 271 139 144 132 155 163 318 .88 0 .541 1.057 33 28 .806 .687 1.241 1.455 1.2 1119 177 75 90 47 62 .541
2 158 141 755 1083 947 153 136 160 1114 1274 .927 0 .561 1.326 63 74 .797 .678 1.254 1.475 1.144 919 177 74 89 64 79 .561
3 171 153 203 367 204 180 163 191 240 431 .806 0 .242 1.13 40 44 .995 .846 1.005 1.182 .597 915 177 74 89 82 97 .242
4 171 156 2869 1701 1504 248 197 231 1770 2001 .923 0 -.697 .56 83 80 1.908 1.621 .524 .617 .437 919 177 73 88 99 114 -.697
5 174 166 14032 23447 23228 272 219 257 27327 27584 0 0 .962 1.616 85 89 .604 .513 1.655 1.947 0 906 177 73 88 117 132 .962
6 162 155 1127 1716 1520 217 196 230 1788 2018 .943 0 .666 1.378 68 71 .741 .63 1.349 1.587 1.279 928 177 72 87 134 149 .666
7 145 136 175 277 111 185 166 195 130 325 .662 0 -.429 .832 42 36 1.577 1.346 .634 .743 .509 919 177 72 87 152 167 -.429
8 136 131 10 158 14 155 144 169 16 185 .143 0 .678 1.031 14 16 .714 .625 1.4 1.6 .205 906 177 72 87 169 184 .678
9 168 131 2394 2350 2216 161 134 157 2607 2764 .925 0 .123 .901 76 76 1.08 .918 .926 1.089 .841 919 177 71 86 187 202 .123
10 199 132 1606 1297 1164 177 133 156 1369 1525 .906 0 -.23 .716 77 77 1.38 1.173 .725 .852 .675 906 177 71 86 204 219 -.23
11 208 128 3727 3309 3175 188 134 157 3735 3892 .943 0 .003 .852 80 79 1.174 .998 .852 1.002 .806 928 177 70 85 222 237 .003
12 225 131 2921 3055 2919 203 136 160 3434 3594 .929 0 .233 1.01 83 85 1.001 .851 .999 1.176 .91 919 177 70 85 239 254 .233
13 269 134 122 273 138 217 135 158 163 321 .788 0 .418 1.339 41 33 .884 .748 1.131 1.336 .935 919 177 70 85 257 272 .418
14 229 135 1115 1415 1285 181 130 152 1512 1664 .927 0 .439 1.147 70 69 .868 .737 1.152 1.356 1.118 918 177 69 84 275 290 .439
15 259 143 1526 1955 1818 203 137 161 2139 2300 .942 0 .487 1.193 70 68 .839 .713 1.191 1.402 1.146 906 177 69 84 292 307 .487
16 168 142 140 260 122 158 138 162 143 305 .714 0 .031 1.104 35 38 1.148 .979 .871 1.021 .559 928 177 68 83 310 325 .031
17 142 136 8 164 28 141 136 160 32 192 .231 0 2 1.1 16 18 .286 .25 3.5 4 .409 906 177 68 83 327 342 2
18 143 139 10 173 38 140 135 158 45 203 .473 0 2.17 2.105 13 20 .263 .222 3.8 4.5 .875 928 177 67 82 345 360 2.17
19 145 142 968 2194 2061 141 133 156 2425 2581 5.604 0 1.325 1.938 21 27 .47 .399 2.129 2.505 12.27 919 177 67 82 362 377 1.325
20 143 142 147 6 154 141 165 7 172 .091 0 1.6 9 15 0 .094 906 177 67 82 380 395

Total number of rows: 18432

Table truncated, full table size 2253 Kbytes.




Supplementary data files not provided
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