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Sample GSM2030 Query DataSets for GSM2030
Status Public on Jun 27, 2002
Title FL-10
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name FL-10
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Follicular Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n081
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 194 181 62 182 45 144 137 187 62 249 .769 0 0 .808 27 17 1.378 1 .726 1 .801 1119 177 82 97 103 118 0
2 212 197 1014 1248 1076 179 172 235 1474 1709 .898 0 .54 1.056 63 65 .942 .688 1.061 1.454 .972 906 177 82 97 120 135 .54
3 219 206 1702 642 453 196 189 258 621 879 .91 0 -1.455 .28 63 57 3.757 2.741 .266 .365 .252 919 177 82 97 138 153 -1.455
4 246 224 3808 1874 1665 249 209 286 2281 2567 0 0 -.739 .444 64 59 2.287 1.669 .437 .599 0 928 177 82 97 155 170 -.739
5 289 244 15783 21167 20931 312 236 323 28672 28995 0 0 .861 1.308 90 94 .754 .55 1.326 1.817 0 928 177 82 97 173 188 .861
6 266 217 1622 2289 2112 252 177 242 2893 3135 .886 0 .835 1.255 68 73 .768 .561 1.302 1.784 1.101 896 177 83 98 190 205 .835
7 198 184 4037 3306 3188 130 118 161 4367 4528 0 0 .113 .783 68 72 1.266 .924 .79 1.082 0 906 177 83 98 208 223 .113
8 178 168 1874 1611 1513 106 98 134 2072 2206 .93 0 .145 .81 64 68 1.239 .904 .807 1.106 .749 928 177 83 98 225 240 .145
9 193 162 2925 1935 1842 111 93 127 2523 2650 .889 0 -.213 .62 79 81 1.588 1.159 .63 .863 .553 928 177 83 98 243 258 -.213
10 212 166 1949 1336 1245 114 91 124 1706 1830 .915 0 -.192 .628 71 76 1.565 1.142 .639 .875 .566 928 177 83 98 260 275 -.192
11 189 158 4633 4948 4862 99 86 117 6661 6778 0 0 .524 1.07 70 79 .953 .696 1.049 1.438 0 896 177 84 99 278 293 .524
12 234 156 2995 2313 2235 125 78 106 3062 3168 .953 0 .032 .741 71 80 1.34 .978 .746 1.022 .677 905 177 84 99 295 310 .032
13 228 151 275 258 188 117 70 95 258 353 .958 0 -.092 .628 27 32 1.463 1.066 .684 .938 .662 919 177 84 99 313 328 -.092
14 165 154 1122 1115 1045 78 70 95 1432 1527 .95 0 .352 .924 60 67 1.074 .784 .931 1.276 .85 928 177 84 99 330 345 .352
15 176 166 1684 636 561 82 75 102 769 871 .907 0 -1.131 .328 69 70 3.002 2.19 .333 .457 .303 941 177 84 99 348 363 -1.131
16 175 166 1932 875 800 80 75 102 1096 1198 .921 0 -.818 .407 55 58 2.415 1.763 .414 .567 .373 896 177 85 100 366 381 -.818
17 165 158 7 108 37 77 71 97 50 147 .201 0 2.837 1.143 14 24 .189 .14 5.286 7.143 .513 906 177 85 100 383 398 2.837
18 162 154 50 128 54 80 74 101 74 175 .42 0 .566 .819 19 30 .926 .676 1.08 1.48 .369 919 177 85 100 401 416 .566
19 187 168 27 94 8 127 86 117 11 128 .327 0 -1.295 .72 9 16 3.375 2.455 .296 .407 .057 928 177 85 100 418 433 -1.295
20 241 209 76 313 172 230 141 193 235 428 .626 0 1.629 2.008 36 59 .442 .323 2.263 3.092 .855 928 177 85 100 436 451 1.629

Total number of rows: 18432

Table truncated, full table size 2212 Kbytes.




Supplementary data files not provided
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