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Sample GSM2033 Query DataSets for GSM2033
Status Public on Jun 27, 2002
Title DLCL-0049
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0049
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n085
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 136 128 38 84 18 71 66 117 33 150 .581 0 -.204 .541 26 25 2.111 1.152 .474 .868 .344 1011 208 78 94 53 69 -.204
2 137 129 346 347 280 73 67 119 500 619 .866 0 .531 .717 51 55 1.236 .692 .809 1.445 .772 799 208 77 93 70 86 .531
3 140 133 536 869 802 73 67 119 1432 1551 .863 0 1.418 1.15 55 54 .668 .374 1.496 2.672 1.409 802 208 77 93 88 104 1.418
4 143 136 1558 960 892 75 68 121 1593 1714 .891 0 .032 .569 61 59 1.747 .978 .573 1.022 .555 789 208 77 93 105 121 .032
5 148 138 6742 15310 15243 75 67 119 27220 27339 0 0 2.013 2.217 74 87 .442 .248 2.261 4.037 0 788 208 77 93 123 139 2.013
6 151 140 741 876 808 73 68 121 1443 1564 .885 0 .962 1.006 62 63 .917 .514 1.09 1.947 1.063 765 208 77 93 140 156 .962
7 149 138 754 1272 1204 75 68 121 2150 2271 .804 0 1.512 1.3 51 57 .626 .351 1.597 2.851 1.243 801 208 76 92 158 174 1.512
8 154 140 100 161 90 78 71 126 161 287 .532 0 .687 .799 36 40 1.111 .621 .9 1.61 .452 799 208 76 92 175 191 .687
9 153 138 1621 1344 1274 78 70 125 2275 2400 .833 0 .489 .739 74 69 1.272 .713 .786 1.403 .678 815 208 76 92 193 209 .489
10 149 138 1077 686 619 77 67 119 1106 1225 .864 0 .038 .593 70 73 1.74 .974 .575 1.027 .505 791 208 76 92 211 227 .038
11 149 136 3054 1261 1191 78 70 125 2126 2251 .867 0 -.523 .393 72 73 2.564 1.437 .39 .696 .357 775 208 76 92 228 244 -.523
12 151 140 2265 1621 1554 76 67 119 2775 2894 .868 0 .293 .688 77 80 1.458 .816 .686 1.225 .617 768 208 76 92 246 262 .293
13 150 144 67 126 61 71 65 116 109 225 .762 0 .702 .903 21 31 1.098 .615 .91 1.627 .597 799 208 75 91 263 279 .702
14 143 139 387 288 225 68 63 112 402 514 .852 0 .055 .586 53 56 1.72 .963 .581 1.039 .53 812 208 75 91 281 297 .055
15 141 136 880 1245 1180 72 65 116 2107 2223 .896 0 1.26 1.17 59 64 .746 .418 1.341 2.394 1.257 789 208 75 91 298 314 1.26
16 146 138 159 151 83 74 68 121 148 269 .758 0 -.103 .764 29 33 1.916 1.074 .522 .931 .38 777 208 75 91 316 332 -.103
17 146 135 18 77 8 73 69 123 14 137 .219 0 -.363 .461 24 22 2.25 1.286 .444 .778 .125 765 208 75 91 333 349 -.363
18 136 125 25 90 25 70 65 116 44 160 .15 0 .816 .697 26 26 1 .568 1 1.76 .223 815 208 74 90 351 367 .816
19 132 121 18 70 5 69 65 116 8 125 .101 0 -1.17 .725 23 21 3.6 2.25 .278 .444 .055 802 208 74 90 369 385 -1.17
20 136 127 5 71 4 69 67 119 7 126 .059 0 .485 .656 15 22 1.25 .714 .8 1.4 .037 799 208 74 90 386 402 .485

Total number of rows: 18432

Table truncated, full table size 2189 Kbytes.




Supplementary data files not provided
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