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Sample GSM2035 Query DataSets for GSM2035
Status Public on Jun 27, 2002
Title DLCL-0047
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0047
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n091
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 239 211 186 325 184 148 141 142 186 328 .622 0 0 .982 32 27 1.011 1 .989 1 .285 1011 208 38 54 159 175 0
2 219 208 215 340 197 151 143 144 199 343 .713 0 -.112 .814 44 39 1.091 1.08 .916 .926 .58 766 208 38 54 176 192 -.112
3 223 215 55 189 43 153 146 147 43 190 .514 0 -.355 .628 27 26 1.279 1.279 .782 .782 .291 779 208 38 54 194 210 -.355
4 217 204 566 1111 961 155 150 151 971 1122 .834 0 .779 1.35 44 43 .589 .583 1.698 1.716 1.443 801 208 38 54 211 227 .779
5 225 203 10679 14453 14305 163 148 149 14449 14598 0 0 .436 1.338 74 76 .747 .739 1.34 1.353 0 802 208 38 54 229 245 .436
6 228 210 960 1598 1462 156 136 137 1477 1614 .821 0 .622 1.359 57 66 .657 .65 1.523 1.539 1.239 799 208 38 54 246 262 .622
7 216 200 27 166 35 137 131 132 35 167 .112 0 .374 .795 21 23 .771 .771 1.296 1.296 .099 782 208 39 55 264 280 .374
8 212 197 17 162 30 136 132 133 30 163 .376 0 .819 .957 17 17 .567 .567 1.765 1.765 .42 779 208 39 55 282 298 .819
9 219 201 1636 4262 4125 168 137 138 4167 4305 4.142 0 1.349 2.43 61 66 .397 .393 2.521 2.547 2.092 791 208 39 55 299 315 1.349
10 236 189 1396 2420 2285 176 135 136 2308 2444 .885 0 .725 1.615 75 73 .611 .605 1.637 1.653 1.455 802 208 39 55 317 333 .725
11 289 187 4127 5089 4958 239 131 132 5008 5140 0 0 .279 1.18 66 69 .832 .824 1.201 1.213 0 810 208 39 55 334 350 .279
12 303 199 2740 4332 4204 270 128 129 4246 4375 0 0 .632 1.426 75 77 .652 .645 1.534 1.55 0 768 208 40 56 352 368 .632
13 228 202 109 288 169 159 119 120 170 290 .733 0 .641 .772 27 25 .645 .641 1.55 1.56 1.19 775 208 40 56 369 385 .641
14 357 206 857 905 782 230 123 124 790 914 .856 0 -.117 .848 60 58 1.096 1.085 .912 .922 .801 807 208 40 56 387 403 -.117
15 361 211 803 555 424 238 131 132 428 560 .825 0 -.908 .45 50 40 1.894 1.876 .528 .533 .478 802 208 40 56 405 421 -.908
16 220 210 46 223 93 135 130 131 94 225 .525 0 1.031 .768 22 23 .495 .489 2.022 2.043 .947 800 208 40 56 422 438 1.031
17 214 202 9 134 8 133 126 127 8 135 .017 0 -.17 .5 18 12 1.125 1.125 .889 .889 .01 768 208 41 57 440 456 -.17
18 502 201 22 142 7 386 135 136 7 143 .13 0 -1.652 .458 18 12 3.143 3.143 .318 .318 .072 777 208 41 57 457 473 -1.652
19 512 212 39 319 182 388 137 138 184 322 .289 0 2.238 .401 20 12 .214 .212 4.667 4.718 2.657 779 208 41 57 475 491 2.238
20 231 220 20 143 7 142 136 137 7 144 .195 0 -1.515 .49 18 10 2.857 2.857 .35 .35 .075 789 208 41 57 492 508 -1.515

Total number of rows: 18432

Table truncated, full table size 2207 Kbytes.




Supplementary data files not provided
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