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Sample GSM2036 Query DataSets for GSM2036
Status Public on Jun 27, 2002
Title DLCL-0042
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0042
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n006
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 129 121 49 313 84 237 229 132 48 180 .692 0 -.018 1.237 31 22 .583 1.013 1.714 .987 1.035 1119 177 83 98 92 107 -.018
2 142 127 446 655 424 247 231 133 244 377 .891 0 -.869 .973 66 62 1.052 1.826 .951 .548 .883 896 177 83 98 109 124 -.869
3 145 129 1088 2332 2095 250 237 137 1207 1343 .953 0 .149 1.977 73 73 .519 .902 1.926 1.109 1.749 906 177 83 98 127 142 .149
4 139 130 1807 2807 2570 242 237 137 1480 1617 .929 0 -.288 1.436 77 77 .703 1.221 1.422 .819 1.295 919 177 83 98 144 159 -.288
5 138 129 2463 11971 11736 242 235 135 6759 6895 0 0 1.456 4.664 81 83 .21 .364 4.765 2.744 0 928 177 83 98 162 177 1.456
6 139 130 630 2129 1901 234 228 131 1095 1226 .914 0 .797 2.903 71 74 .331 .575 3.017 1.738 2.619 937 177 83 98 179 194 .797
7 133 126 2492 6268 6047 226 221 127 3483 3610 0 0 .483 2.449 85 84 .412 .716 2.427 1.398 0 928 177 83 98 197 212 .483
8 133 127 1166 3249 3043 217 206 119 1753 1871 .918 0 .588 2.561 82 81 .383 .665 2.61 1.503 2.33 896 177 84 99 214 229 .588
9 128 121 1235 5189 4998 200 191 110 2879 2989 0 0 1.221 3.969 76 81 .247 .429 4.047 2.331 0 896 177 84 99 232 247 1.221
10 129 122 1215 3237 3061 181 176 101 1763 1864 .893 0 .537 2.449 84 88 .397 .689 2.519 1.451 2.041 905 177 84 99 249 264 .537
11 121 117 1962 2471 2306 171 165 95 1328 1423 .9 0 -.563 1.175 87 89 .851 1.477 1.175 .677 1.002 919 177 84 99 267 282 -.563
12 121 116 1688 6488 6329 166 159 92 3645 3737 0 0 1.111 3.662 88 94 .267 .463 3.749 2.159 0 928 177 84 99 284 299 1.111
13 120 114 58 246 91 163 155 89 52 142 .83 0 -.146 1.286 24 23 .637 1.107 1.569 .904 1.154 928 177 84 99 302 317 -.146
14 118 112 762 908 752 160 156 90 433 523 .897 0 -.815 .957 79 75 1.013 1.759 .987 .568 .888 928 177 84 99 319 334 -.815
15 121 113 1459 2905 2750 162 155 89 1584 1673 .941 0 .118 1.85 79 84 .531 .921 1.885 1.086 1.753 896 177 85 100 337 352 .118
16 122 114 2426 3503 3347 166 156 90 1928 2018 .938 0 -.332 1.372 85 81 .725 1.258 1.38 .795 1.284 896 177 85 100 354 369 -.332
17 121 113 2726 13093 12940 163 153 88 7453 7541 0 0 1.451 4.56 85 89 .211 .366 4.747 2.734 0 906 177 85 100 372 387 1.451
18 124 114 854 2774 2621 164 153 88 1510 1598 .902 0 .822 2.974 77 81 .326 .566 3.069 1.768 2.664 918 177 85 100 389 404 .822
19 126 118 2500 6378 6228 160 150 86 3587 3673 0 0 .521 2.398 79 85 .401 .697 2.491 1.435 0 928 177 85 100 407 422 .521
20 125 115 1248 3448 3304 150 144 83 1903 1986 .916 0 .609 2.511 80 87 .378 .656 2.647 1.525 2.296 928 177 85 100 424 439 .609

Total number of rows: 18432

Table truncated, full table size 2185 Kbytes.




Supplementary data files not provided
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