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GEO accession:
Sample GSM203625
Query DataSets for GSM203625
Status
Public on Jun 25, 2007
Title
Colon - 89120
Sample type
RNA
Source name
Colon
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.9
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 24
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 1
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological Dukes Stage: A
Primary Site: Colon
Histology: Adenocarcinoma
Submission date
Jun 22, 2007
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
ecurley@intgen.org
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
644.0
P
0.000662
AFFX-BioB-M_at
1194.3
P
0.000044
AFFX-BioB-3_at
636.0
P
0.000044
AFFX-BioC-5_at
1908.4
P
0.000052
AFFX-BioC-3_at
2418.9
P
0.000044
AFFX-BioDn-5_at
6120.0
P
0.000044
AFFX-BioDn-3_at
9981.6
P
0.000060
AFFX-CreX-5_at
30411.5
P
0.000052
AFFX-CreX-3_at
34848.8
P
0.000044
AFFX-DapX-5_at
7567.8
P
0.000044
AFFX-DapX-M_at
13436.4
P
0.000052
AFFX-DapX-3_at
14659.8
P
0.000044
AFFX-LysX-5_at
754.9
P
0.000044
AFFX-LysX-M_at
1139.2
P
0.000060
AFFX-LysX-3_at
1981.5
P
0.000044
AFFX-PheX-5_at
1090.3
P
0.000044
AFFX-PheX-M_at
1512.9
P
0.000044
AFFX-PheX-3_at
1169.3
P
0.000044
AFFX-ThrX-5_at
1282.6
P
0.000052
AFFX-ThrX-M_at
2118.6
P
0.000044
Total number of rows:
54675
Table truncated, full table size
1468 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM203625.CEL.gz
4.7 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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