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Sample GSM2037 Query DataSets for GSM2037
Status Public on Jun 27, 2002
Title DLCL-0035
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0035
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n101
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 118 107 147 191 35 166 156 917 206 1123 .313 0 .487 .826 44 32 4.2 .714 .238 1.401 .088 1119 177 39 54 63 78 .487
2 120 110 75 169 12 167 157 923 71 994 .094 0 -.079 .734 38 25 6.25 1.056 .16 .947 .046 896 177 39 54 80 95 -.079
3 118 110 6 171 15 168 156 917 88 1005 0 3.874 1.725 15 24 .4 .068 2.5 14.667 896 177 39 54 98 113 3.874
4 127 107 56 179 18 200 161 947 105 1052 0 .907 1.351 27 22 3.111 .533 .321 1.875 896 177 39 54 115 130 .907
5 135 112 20694 2785 2620 207 165 970 15412 16382 0 0 -.425 .135 88 78 7.898 1.343 .127 .745 0 896 177 39 54 133 148 -.425
6 131 115 24 171 8 198 163 958 47 1005 .016 0 .97 1.527 24 23 3 .511 .333 1.958 .023 896 177 39 54 150 165 .97
7 117 108 7 174 9 175 165 970 53 1023 0 2.921 2.328 22 23 .778 .132 1.286 7.571 919 177 39 54 168 183 2.921
8 116 104 10 190 28 177 162 952 165 1117 0 4.044 1.986 23 30 .357 .061 2.8 16.5 896 177 39 54 186 201 4.044
9 120 108 718 240 76 181 164 964 447 1411 .445 0 -.684 .247 57 37 9.447 1.606 .106 .623 .071 896 177 39 54 203 218 -.684
10 119 108 1664 275 106 183 169 994 623 1617 .365 0 -1.417 .074 83 54 15.698 2.671 .064 .374 .043 896 177 39 54 221 236 -1.417
11 123 111 5282 356 187 184 169 994 1100 2094 0 0 -2.264 .037 85 66 28.246 4.802 .035 .208 0 896 177 39 54 238 253 -2.264
12 126 116 3340 414 251 180 163 958 1477 2435 .671 0 -1.177 .086 85 73 13.307 2.261 .075 .442 .062 896 177 39 54 256 271 -1.177
13 123 112 80 213 52 181 161 947 305 1252 .169 0 1.931 1.09 40 37 1.538 .262 .65 3.813 .087 896 177 39 54 273 288 1.931
14 128 110 997 243 84 177 159 935 494 1429 .455 0 -1.013 .119 70 43 11.869 2.018 .084 .495 .065 919 177 39 54 291 306 -1.013
15 149 125 34 168 9 171 159 935 53 988 .16 0 .64 1.016 25 23 3.778 .642 .265 1.559 .132 896 177 39 54 309 324 .64
16 247 140 28 173 14 236 159 935 82 1017 .084 0 1.55 1.027 16 21 2 .341 .5 2.929 .04 896 177 39 54 326 341 1.55
17 244 139 3 185 16 245 169 994 94 1088 .111 0 4.97 1 18 24 .188 .032 5.333 31.333 .147 896 177 39 54 344 359 4.97
18 135 122 6 172 4 180 168 988 23 1011 0 1.939 1.69 18 18 1.5 .261 .667 3.833 896 177 39 54 361 376 1.939
19 128 116 17 181 19 177 162 952 112 1064 .143 0 2.72 1.8 28 23 .895 .152 1.118 6.588 .198 896 177 39 54 379 394 2.72
20 130 116 11 175 13 176 162 952 77 1029 0 2.807 1.438 18 27 .846 .143 1.182 7 896 177 39 54 396 411 2.807

Total number of rows: 18432

Table truncated, full table size 2259 Kbytes.




Supplementary data files not provided
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