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Sample GSM203763 Query DataSets for GSM203763
Status Public on Jun 25, 2007
Title Colon - 348062
Sample type RNA
 
Source name Colon
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.2
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 33
Presenting Symptoms: Constipation
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 2
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 2
Primary Site: Colon
Histology: Adenocarcinoma arising in a villous adenoma
 
Submission date Jun 22, 2007
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1821.0 P 0.000258
AFFX-BioB-M_at 2561.1 P 0.000044
AFFX-BioB-3_at 1378.4 P 0.000044
AFFX-BioC-5_at 2016.1 P 0.000060
AFFX-BioC-3_at 2210.5 P 0.000044
AFFX-BioDn-5_at 15286.8 P 0.000044
AFFX-BioDn-3_at 22452.9 P 0.000044
AFFX-CreX-5_at 57035.7 P 0.000052
AFFX-CreX-3_at 63052.7 P 0.000044
AFFX-DapX-5_at 3742.8 P 0.000044
AFFX-DapX-M_at 6953.6 P 0.000147
AFFX-DapX-3_at 10860.7 P 0.000044
AFFX-LysX-5_at 378.0 P 0.000110
AFFX-LysX-M_at 710.6 P 0.000446
AFFX-LysX-3_at 1589.3 P 0.000052
AFFX-PheX-5_at 676.9 P 0.000044
AFFX-PheX-M_at 1017.2 P 0.000052
AFFX-PheX-3_at 826.1 P 0.000044
AFFX-ThrX-5_at 649.6 P 0.000147
AFFX-ThrX-M_at 1175.2 P 0.000044

Total number of rows: 54675

Table truncated, full table size 1473 Kbytes.




Supplementary file Size Download File type/resource
GSM203763.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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