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Sample GSM2039 Query DataSets for GSM2039
Status Public on Jun 27, 2002
Title DLCL-0026
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0026
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n125
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 127 66 4 332 34 452 298 209 24 233 .298 0 2.574 5.059 17 18 .118 .168 8.5 5.955 .852 1119 177 79 94 77 92 2.574
2 71 65 10 327 37 311 290 203 26 229 0 1.374 3.478 27 19 .27 .386 3.7 2.592 928 177 78 93 94 109 1.374
3 69 63 2 310 23 305 287 201 16 217 .101 0 3.01 3.431 19 17 .087 .124 11.5 8.057 .397 928 177 78 93 112 127 3.01
4 70 62 12 318 36 310 282 198 25 223 0 1.072 2.567 28 19 .333 .476 3 2.102 928 177 78 93 129 144 1.072
5 67 59 15 319 36 307 283 198 25 223 .33 0 .75 2.395 28 18 .417 .595 2.4 1.681 1.177 937 177 78 93 147 162 .75
6 64 59 8 286 3 292 283 198 2 200 .152 0 -1.928 2.64 26 14 2.667 3.806 .375 .263 .499 928 177 78 93 164 179 -1.928
7 65 57 13 297 28 275 269 188 20 208 .041 0 .594 3.676 31 19 .464 .663 2.154 1.509 .138 941 177 78 93 182 197 .594
8 67 62 4 278 31 263 247 173 22 195 0 2.441 3.92 16 23 .129 .184 7.75 5.43 928 177 78 93 200 215 2.441
9 92 66 1 266 14 292 252 177 10 186 .085 0 3.294 2.389 18 19 .071 .102 14 9.809 .282 928 177 78 93 217 232 3.294
10 98 63 1224 1578 1323 309 255 179 927 1106 .913 0 -.401 1.062 69 61 .925 1.321 1.081 .757 .962 937 177 78 93 235 250 -.401
11 119 61 3511 1767 1515 316 252 177 1061 1238 0 0 -1.726 .44 80 63 2.317 3.308 .432 .302 0 928 177 78 93 252 267 -1.726
12 117 62 2441 3106 2860 308 246 172 2004 2176 .952 0 -.285 1.185 75 70 .853 1.218 1.172 .821 1.144 941 177 78 93 270 285 -.285
13 72 58 4 252 12 272 240 168 8 177 .065 0 1.072 3.636 18 15 .333 .476 3 2.102 .186 918 177 78 93 288 303 1.072
14 73 56 844 1524 1291 279 233 163 904 1068 .928 0 .1 1.531 76 71 .654 .933 1.53 1.072 1.459 906 177 78 93 305 320 .1
15 75 55 273 38 290 235 165 27 191 .123 0 4.055 20 24 0 .471 896 177 78 93 323 338
16 63 54 5 266 30 258 236 165 21 186 .092 0 2.072 3.852 20 23 .167 .238 6 4.204 .314 896 177 78 93 340 355 2.072
17 62 56 7 264 38 240 226 158 27 185 .109 0 1.927 2.692 24 22 .184 .263 5.429 3.803 .348 919 177 78 93 358 373 1.927
18 64 59 266 41 236 225 158 29 186 .13 0 3.691 16 23 0 .503 896 177 78 93 376 391
19 64 58 9 257 32 240 225 158 22 180 .2 0 1.317 2.522 25 22 .281 .401 3.556 2.491 .525 896 177 78 93 393 408 1.317
20 64 58 2 255 30 242 225 158 21 179 0 3.394 2.71 23 20 .067 .095 15 10.509 896 177 78 93 411 426 3.394

Total number of rows: 18432

Table truncated, full table size 2239 Kbytes.




Supplementary data files not provided
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