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Sample GSM2043 Query DataSets for GSM2043
Status Public on Jun 27, 2002
Title DLCL-0019
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0019
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n104
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 169 162 153 214 38 193 176 1257 271 1528 .148 0 .825 .915 33 27 4.026 .565 .248 1.771 .037 1011 208 117 133 32 48 .825
2 163 158 237 217 37 197 180 1285 265 1550 .245 0 .161 .348 50 27 6.405 .894 .156 1.118 .082 799 208 116 132 49 65 .161
3 163 153 105 224 44 196 180 1285 315 1600 .153 0 1.585 .757 35 28 2.386 .333 .419 3 .062 802 208 116 132 67 83 1.585
4 160 151 9 197 20 197 177 1264 143 1407 .056 0 3.99 1.216 17 25 .45 .063 2.222 15.889 .082 775 208 116 132 84 100 3.99
5 167 156 19008 4024 3842 199 182 1300 27442 28742 0 0 .53 .216 76 71 4.947 .693 .202 1.444 0 767 208 116 132 102 118 .53
6 169 157 18 199 19 196 180 1285 136 1421 0 2.918 1.482 23 25 .947 .132 1.056 7.556 799 208 115 131 119 135 2.918
7 164 154 3 182 197 185 1321 1300 0 1.15 16 19 805 208 115 131 137 153
8 163 154 16 199 20 192 179 1278 143 1421 0 3.16 1.337 21 26 .8 .112 1.25 8.938 788 208 115 131 155 171 3.16
9 167 157 209 198 22 189 176 1257 157 1414 .369 0 -.413 .56 32 20 9.5 1.331 .105 .751 .059 765 208 115 131 172 188 -.413
10 173 154 1596 378 200 191 178 1271 1429 2700 .68 0 -.159 .145 68 53 7.98 1.117 .125 .895 .115 801 208 114 130 190 206 -.159
11 228 161 4709 668 487 198 181 1292 3479 4771 0 0 -.437 .111 80 69 9.669 1.354 .103 .739 0 789 208 114 130 207 223 -.437
12 228 162 2775 511 331 197 180 1285 2365 3650 .757 0 -.231 .124 79 68 8.384 1.173 .119 .852 .111 791 208 114 130 225 241 -.231
13 177 158 242 197 20 196 177 1264 143 1407 .276 0 -.759 .515 33 21 12.1 1.692 .083 .591 .035 779 208 114 130 243 259 -.759
14 172 162 1432 295 121 193 174 1242 865 2107 .565 0 -.727 .108 67 50 11.835 1.655 .084 .604 .072 799 208 113 129 260 276 -.727
15 184 170 101 275 103 191 172 1228 736 1964 .487 0 2.865 1.157 43 46 .981 .137 1.02 7.287 .445 791 208 113 129 278 294 2.865
16 183 170 43 221 49 190 172 1228 350 1578 .124 0 3.025 2 18 31 .878 .123 1.14 8.14 .054 775 208 113 129 295 311 3.025
17 171 164 198 23 188 175 1250 164 1414 .054 0 2.227 14 27 0 .079 781 208 113 129 313 329
18 168 159 9 200 17 192 183 1307 121 1428 0 3.749 .983 19 24 .529 .074 1.889 13.444 812 208 112 128 331 347 3.749
19 186 172 25 194 1 205 193 1378 7 1385 .212 0 -1.837 1.136 22 20 25 3.571 .04 .28 .225 789 208 112 128 348 364 -1.837
20 217 198 63 247 41 221 206 1471 293 1764 .202 0 2.217 .698 30 22 1.537 .215 .651 4.651 .35 777 208 112 128 366 382 2.217

Total number of rows: 18432

Table truncated, full table size 2311 Kbytes.




Supplementary data files not provided
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