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Sample GSM2044 Query DataSets for GSM2044
Status Public on Jun 27, 2002
Title DLCL-0018
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0018
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n129
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 172 168 5 178 16 165 162 103 10 113 0 1.028 1 7 11 .313 .49 3.2 2.04 990 225 39 56 135 152 1.028
2 159 157 10 168 3 167 165 105 2 107 .142 0 -2.387 1.142 12 10 3.333 5.23 .3 .191 .149 731 225 39 56 152 169 -2.387
3 144 135 149 160 156 99 -4 95 .017 0 .878 8 7 0 .02 720 225 39 56 170 187
4 129 122 1 161 11 160 150 96 7 103 .092 0 2.81 1.46 13 11 .091 .143 11 7.011 .108 720 225 39 56 187 204 2.81
5 125 117 17 143 2 150 141 90 1 91 .163 0 -3.737 .88 19 9 8.5 13.336 .118 .075 .17 731 225 39 56 205 222 -3.737
6 109 100 13 137 2 141 135 86 1 87 .016 0 -3.35 1.076 20 11 6.5 10.198 .154 .098 .016 745 225 39 56 222 239 -3.35
7 85 79 126 136 130 83 -3 80 0 1.1 16 12 0 771 225 39 56 240 257
8 75 69 6 129 1 133 128 82 1 82 0 -3.235 1.067 21 12 6 9.414 .167 .106 756 225 39 56 258 275 -3.235
9 78 75 127 1 131 126 80 1 81 0 1.524 15 12 0 766 225 39 56 275 292
10 76 72 60 173 49 129 124 79 31 110 .665 0 -.942 .74 30 15 1.224 1.921 .817 .521 .604 756 225 39 56 293 310 -.942
11 80 70 2142 1868 1750 132 118 75 1115 1191 .938 0 -.941 .806 62 60 1.224 1.92 .817 .521 .756 756 225 39 56 310 327 -.941
12 84 72 1435 2061 1945 143 116 74 1240 1314 .945 0 -.211 1.334 62 60 .738 1.158 1.355 .864 1.318 720 225 40 57 328 345 -.211
13 77 70 16 163 48 129 115 73 31 104 .845 0 .935 1.222 19 18 .333 .523 3 1.912 2.324 720 225 40 57 345 362 .935
14 77 69 676 1531 1415 128 116 74 902 976 .925 0 .416 2.03 63 63 .478 .75 2.093 1.334 1.872 735 225 40 57 363 380 .416
15 80 69 13 114 132 119 76 -3 73 .058 0 .577 29 7 .067 731 225 40 57 381 398
16 77 68 8 116 127 117 75 -1 74 .047 0 1.154 24 8 .061 756 225 40 57 398 415
17 71 66 11 118 9 115 109 69 6 75 .226 0 -.939 1.233 23 16 1.222 1.918 .818 .521 .202 756 225 40 57 416 433 -.939
18 68 64 2 115 8 110 107 68 5 73 .014 0 1.35 1.125 18 15 .25 .392 4 2.549 .018 756 225 40 57 433 450 1.35
19 66 64 7 106 112 109 69 -2 68 .016 0 1.125 22 9 .018 756 225 40 57 451 468
20 67 63 5 112 1 116 111 71 1 71 .01 0 -2.972 1.118 20 13 5 7.845 .2 .127 .012 756 225 40 57 468 485 -2.972

Total number of rows: 18432

Table truncated, full table size 2194 Kbytes.




Supplementary data files not provided
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