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Sample GSM2046323 Query DataSets for GSM2046323
Status Public on Jan 27, 2016
Title Pollen Control M82, rep4
Sample type RNA
 
Source name Anthers one day preanthesis
Organism Solanum lycopersicum
Characteristics tissue: Anthers (pollen)
line: parental
Treatment protocol All plants were treated equally. Collected tissue was frozen in liquid nitrogen.
Growth protocol Standard greenhouse cultivation. Three-week seedlings were transferred to individual 3.75L pots, grown in climate-controlled facility. Watered daily, feritlized weekly
Extracted molecule total RNA
Extraction protocol Trizol, RNAeasy purification (Qiagen) following manufacturer's instructions
Label biotin
Label protocol Single cycle
 
Hybridization protocol Standard
Scan protocol Affy GCOS
Description Gene expression data from anthers from domesticated tomato (control)
Data processing CEL files were processed using the rma() function from the Affy package in R, with default settings.
 
Submission date Jan 26, 2016
Last update date Jan 27, 2016
Contact name Rafael F Guerrero
Organization name Indiana University
Department Biology
Street address 1001 E 3rd St
City Bloomington
State/province IN - Indiana
ZIP/Postal code 47405
Country USA
 
Platform ID GPL4741
Series (1)
GSE77232 Pre-anthesis anthers of S. pennellii introgression lines

Data table header descriptions
ID_REF
VALUE log2(intensity)

Data table
ID_REF VALUE
AFFX-BioB-3_at 7.385783379
AFFX-BioB-5_at 7.233306911
AFFX-BioB-M_at 7.937891455
AFFX-BioC-3_at 9.112705721
AFFX-BioC-5_at 8.896701804
AFFX-BioDn-3_at 10.83630728
AFFX-BioDn-5_at 10.08422542
AFFX-CreX-3_at 12.51707864
AFFX-CreX-5_at 12.14842067
AFFX-DapX-3_at 9.346275093
AFFX-DapX-5_at 7.369056294
AFFX-DapX-M_at 8.844699108
AFFX-Le_17SrRNA_at 6.51872649
AFFX-Le_25SrRNA_at 8.042844753
AFFX-Le_GlutTrans_3_at 12.15122109
AFFX-Le_GlutTrans_5_at 11.82100047
AFFX-Le_GlutTrans_M_r_at 10.948501
AFFX-Le_PhyB2_3_at 7.029003219
AFFX-Le_PhyB2_5_at 4.323260058
AFFX-Le_PhyB2_M_at 3.952364559

Total number of rows: 10209

Table truncated, full table size 307 Kbytes.




Supplementary file Size Download File type/resource
GSM2046323_LM01T004.CEL.gz 1.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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