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Sample GSM2047 Query DataSets for GSM2047
Status Public on Jun 27, 2002
Title DLCL-0014
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0014
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n114
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 280 263 116 387 65 331 322 685 138 823 .66 0 .251 .82 24 18 1.785 .841 .56 1.19 .396 1011 208 80 96 93 109 .251
2 220 209 139 349 73 290 276 587 155 742 .511 0 .157 .827 41 28 1.904 .897 .525 1.115 .332 799 208 79 95 110 126 .157
3 202 188 4 265 5 272 260 553 10 563 .11 0 1.322 1.6 14 11 .8 .4 1.25 2.5 .168 802 208 79 95 128 144 1.322
4 182 170 218 258 249 529 463 .401 0 1.462 11 10 0 .621 799 208 79 95 145 161
5 231 169 312 499 249 278 250 531 530 1061 .592 0 .764 .886 29 24 1.253 .589 .798 1.699 .452 802 208 79 95 163 179 .764
6 297 210 255 308 271 576 542 .087 0 1.921 3 7 0 .106 775 208 79 95 180 196
7 352 254 171 362 47 340 315 670 100 770 .645 0 -.774 .528 45 22 3.638 1.71 .275 .585 .397 767 208 79 95 198 214 -.774
8 317 206 2 291 322 298 634 619 .264 0 1.067 12 9 .215 765 208 79 95 215 231
9 175 140 11 212 31 203 181 385 66 451 .194 0 2.585 1.206 16 21 .355 .167 2.818 6 .283 801 208 78 94 233 249 2.585
10 123 116 485 382 254 133 128 272 540 812 .818 0 .155 .569 66 59 1.909 .898 .524 1.113 .488 799 208 78 94 250 266 .155
11 115 109 991 419 309 119 110 234 657 891 .822 0 -.593 .326 70 68 3.207 1.508 .312 .663 .277 815 208 78 94 268 284 -.593
12 110 103 538 352 248 111 104 221 527 748 .816 0 -.03 .474 63 65 2.169 1.021 .461 .98 .376 802 208 78 94 286 302 -.03
13 101 91 33 111 12 104 99 210 26 236 .194 0 -.344 .591 37 24 2.75 1.269 .364 .788 .158 789 208 78 94 303 319 -.344
14 102 95 102 136 37 106 99 210 79 289 .679 0 -.369 .564 29 28 2.757 1.291 .363 .775 .306 777 208 78 94 321 337 -.369
15 98 94 112 15 105 97 206 32 238 .148 0 1.069 15 25 0 .172 765 208 78 94 338 354
16 97 89 11 106 14 101 92 195 30 225 .151 0 1.447 1.171 28 27 .786 .367 1.273 2.727 .176 779 208 78 94 356 372 1.447
17 98 89 20 120 30 98 90 191 64 255 .018 0 1.678 1.513 29 38 .667 .313 1.5 3.2 .023 799 208 77 93 373 389 1.678
18 99 94 11 118 25 99 93 197 54 251 .185 0 2.295 1.153 21 34 .44 .204 2.273 4.909 .212 801 208 77 93 391 407 2.295
19 103 96 16 113 10 109 103 219 21 240 .091 0 .392 1 27 22 1.6 .762 .625 1.313 .104 799 208 77 93 408 424 .392
20 110 103 116 10 113 106 225 21 246 .127 0 1.492 17 22 0 .158 815 208 77 93 426 442

Total number of rows: 18432

Table truncated, full table size 2264 Kbytes.




Supplementary data files not provided
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