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Sample GSM2048 Query DataSets for GSM2048
Status Public on Jun 27, 2002
Title DLCL-0013
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0013
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n135
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 299 289 61 923 213 730 710 876 263 1139 .607 0 2.108 2.457 18 14 .286 .232 3.492 4.311 2.124 1013 225 75 92 68 85 2.108
2 298 287 17 707 8 705 699 862 10 872 .504 0 -.766 1.28 9 4 2.125 1.7 .471 .588 1.151 731 225 74 91 85 102 -.766
3 265 268 51 762 91 616 671 828 112 940 .46 0 1.135 1.514 16 7 .56 .455 1.784 2.196 1.153 725 225 74 91 103 120 1.135
4 208 200 88 707 157 473 550 679 193 872 .8 0 1.133 1.756 37 13 .561 .456 1.784 2.193 1.948 746 225 73 90 120 137 1.133
5 173 141 167 740 501 382 239 295 618 913 .516 0 1.888 3.222 77 98 .333 .27 3 3.701 1.051 746 225 73 90 138 155 1.888
6 183 156 165 786 474 416 312 385 585 970 .618 0 1.826 2.935 73 100 .348 .282 2.873 3.545 2.194 756 225 72 89 156 173 1.826
7 202 188 130 758 208 477 550 679 256 935 .528 0 .978 1.609 58 21 .625 .508 1.6 1.969 1.022 731 225 72 89 173 190 .978
8 223 227 122 859 222 534 637 786 274 1060 .79 0 1.167 1.453 36 13 .55 .445 1.82 2.246 1.663 746 225 71 88 191 208 1.167
9 256 264 59 781 89 614 692 854 110 964 .402 0 .899 1.596 20 5 .663 .536 1.508 1.864 .789 731 225 71 88 208 225 .899
10 292 287 70 828 106 687 722 891 131 1022 .737 0 .904 1.623 15 8 .66 .534 1.514 1.871 1.165 761 225 70 87 226 243 .904
11 380 315 6067 4445 3696 797 749 924 4563 5487 0 0 -.411 .604 56 48 1.642 1.33 .609 .752 0 741 225 70 87 244 261 -.411
12 376 320 100 926 167 796 759 937 206 1143 .631 0 1.043 1.395 22 12 .599 .485 1.67 2.06 1.092 756 225 69 86 261 278 1.043
13 325 309 23 767 9 765 758 935 11 946 .219 0 -1.064 1.15 10 2 2.556 2.091 .391 .478 .309 746 225 69 86 279 296 -1.064
14 364 315 974 1920 1155 814 765 944 1426 2370 .928 0 .55 1.195 44 40 .843 .683 1.186 1.464 1.152 768 225 68 85 296 313 .55
15 363 319 3 800 27 819 773 954 33 987 .31 0 3.459 2.108 8 3 .111 .091 9 11 .605 761 225 68 85 314 331 3.459
16 315 306 23 808 46 768 762 940 57 997 .428 0 1.309 2.316 8 3 .5 .404 2 2.478 .994 741 225 68 85 332 349 1.309
17 303 291 13 764 13 751 751 927 16 943 .223 0 .3 1.373 6 2 1 .813 1 1.231 .378 746 225 67 84 349 366 .3
18 1149 298 10 754 23 1300 731 902 28 930 .201 0 1.485 1.868 8 3 .435 .357 2.3 2.8 .39 731 225 67 84 367 384 1.485
19 1262 315 741 17 1399 724 893 21 914 .164 0 2.116 6 3 0 .354 746 225 66 83 384 401
20 333 310 763 36 734 727 897 44 941 .341 0 1.727 4 4 0 .728 746 225 66 83 402 419

Total number of rows: 18432

Table truncated, full table size 2260 Kbytes.




Supplementary data files not provided
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