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Sample GSM2051 Query DataSets for GSM2051
Status Public on Jun 27, 2002
Title DLCL-0010
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0010
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.31
Lot batch = lc8n127
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 86 81 8 231 3 233 228 135 2 137 .176 -100 1.048 18 4 2.667 4.493 .375 .223 .252 1050 208 97 113 26 42 -2.168
2 80 75 5 229 17 221 212 126 10 136 .216 -100 1.667 23 8 .294 .496 3.4 2.018 .296 777 208 97 113 44 60 1.013
3 79 75 4 216 10 211 206 122 6 128 -100 1.481 18 8 .4 .674 2.5 1.484 801 208 96 112 61 77 .569
4 79 74 2 210 7 209 203 120 4 125 -100 1.333 18 4 .286 .481 3.5 2.077 791 208 96 112 79 95 1.055
5 75 71 10 223 23 205 200 119 14 132 .176 -100 1.389 25 10 .435 .733 2.3 1.365 .266 748 203 95 111 97 113 .449
6 77 69 7 217 18 210 199 118 11 129 .047 -100 1.282 24 8 .389 .655 2.571 1.526 .075 759 208 94 110 112 128 .61
7 81 73 5 213 8 216 205 122 5 126 -100 .822 19 4 .625 1.053 1.6 .95 777 208 94 110 130 146 -.075
8 77 72 6 218 13 210 205 122 8 129 -100 1.059 21 7 .462 .778 2.167 1.286 801 208 93 109 147 163 .363
9 92 75 11 207 5 238 202 120 3 123 .231 -100 1.124 24 7 2.2 3.707 .455 .27 .304 781 208 93 109 165 181 -1.89
10 133 78 571 1095 892 305 203 120 529 650 .946 0 -.109 1.479 48 34 .64 1.079 1.562 .927 1.499 777 208 92 108 183 199 -.109
11 218 84 2484 2373 2168 385 205 122 1287 1408 .957 0 -.949 .906 54 52 1.146 1.931 .873 .518 .852 789 208 91 107 200 216 -.949
12 259 86 1573 2951 2732 470 219 130 1621 1751 0 0 .044 1.744 56 56 .576 .97 1.737 1.031 0 777 208 91 107 218 234 .044
13 139 75 7 236 21 340 215 128 12 140 .644 0 .832 1.7 22 7 .333 .562 3 1.78 1.958 789 208 90 106 235 251 .832
14 108 71 746 1970 1766 323 204 121 1048 1169 .949 0 .49 2.205 55 49 .422 .712 2.367 1.405 2.39 802 208 89 105 253 269 .49
15 120 70 5 199 2 355 197 117 1 118 .106 -100 1.633 20 8 2.5 4.212 .4 .237 .183 787 208 89 105 270 286 -2.075
16 77 66 2 191 220 195 116 -2 113 .176 -100 1.786 18 4 .411 845 208 88 104 288 304
17 71 64 5 192 197 192 114 0 114 .132 -100 2.49 21 7 0 .211 842 208 87 103 307 323
18 71 65 4 205 11 197 194 115 7 122 -100 1.381 20 8 .364 .613 2.75 1.632 777 208 87 103 325 341 .707
19 70 64 6 207 11 200 196 116 7 123 .21 -100 1.75 21 6 .545 .919 1.833 1.088 .317 801 208 86 102 342 358 .122
20 71 66 1 204 11 201 193 115 7 121 .123 -100 1.714 20 7 .091 .153 11 6.528 .203 775 208 86 102 360 376 2.707

Total number of rows: 18432

Table truncated, full table size 2220 Kbytes.




Supplementary data files not provided
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