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Sample GSM2053 Query DataSets for GSM2053
Status Public on Jun 27, 2002
Title DLCL-0008
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0008
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n131
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 202 193 22 555 30 532 525 535 31 566 .109 0 .495 1.125 16 1 .733 .71 1.364 1.409 .119 1119 177 58 73 88 103 .495
2 203 192 4 496 536 528 538 506 .248 0 .867 10 2 .351 928 177 57 72 105 120
3 207 194 9 557 17 545 540 551 17 568 .088 0 .918 .774 15 0 .529 .529 1.889 1.889 .085 928 177 57 72 123 138 .918
4 219 204 6 540 555 541 552 551 .023 0 1.022 15 0 .024 928 177 57 72 140 155
5 226 213 4 561 20 561 541 552 20 572 .14 0 2.322 1.203 10 1 .2 .2 5 5 .159 950 177 57 72 158 173 2.322
6 230 213 47 643 93 570 550 561 95 656 .435 0 1.015 1.484 23 10 .505 .495 1.979 2.021 .685 918 177 57 72 176 191 1.015
7 231 215 12 602 53 579 549 560 54 614 .123 0 2.17 1.411 11 6 .226 .222 4.417 4.5 .213 906 177 57 72 193 208 2.17
8 236 223 8 557 19 566 538 548 20 568 .183 0 1.322 1.484 13 3 .421 .4 2.375 2.5 .273 896 177 57 72 211 226 1.322
9 234 219 15 539 14 542 525 535 15 550 .112 0 0 1.284 10 1 1.071 1 .933 1 .138 896 177 57 72 228 243 0
10 266 213 61 544 22 598 522 532 23 555 .748 0 -1.407 .678 20 4 2.773 2.652 .361 .377 .476 919 177 57 72 246 261 -1.407
11 282 214 4240 6060 5529 638 531 541 5642 6183 0 0 .412 1.228 67 60 .767 .752 1.304 1.331 0 896 177 57 72 264 279 .412
12 290 227 3627 6592 6021 735 571 582 6144 6726 0 0 .76 1.603 67 60 .602 .59 1.66 1.694 0 928 177 56 71 281 296 .76
13 303 249 28 614 794 652 665 626 .439 0 .708 17 2 .442 928 177 56 71 299 314
14 293 256 1770 4953 4279 774 674 687 4367 5054 0 0 1.303 2.349 72 71 .414 .405 2.418 2.467 0 928 177 56 71 316 331 1.303
15 280 247 23 634 11 706 623 635 11 646 .471 0 -1.064 1.088 13 4 2.091 2.091 .478 .478 .632 950 177 56 71 334 349 -1.064
16 249 237 15 630 1 642 629 641 1 642 .289 0 -3.907 1.299 12 1 15 15 .067 .067 .354 928 177 56 71 352 367 -3.907
17 240 233 20 666 23 651 643 656 23 679 .2 0 .202 1 15 2 .87 .87 1.15 1.15 .286 919 177 56 71 369 384 .202
18 239 233 27 661 21 640 640 653 21 674 .303 0 -.363 1.356 18 2 1.286 1.286 .778 .778 .537 905 177 56 71 387 402 -.363
19 240 230 3 593 604 599 611 605 .265 0 1.63 11 1 .376 896 177 56 71 404 419
20 236 225 18 573 15 563 558 569 15 584 .248 0 -.263 1.027 15 1 1.2 1.2 .833 .833 .305 919 177 56 71 422 437 -.263

Total number of rows: 18432

Table truncated, full table size 2253 Kbytes.




Supplementary data files not provided
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