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Sample GSM2055 Query DataSets for GSM2055
Status Public on Jun 27, 2002
Title DLCL-0006
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0006
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n111
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 368 356 163 482 194 298 288 293 198 491 .876 0 .281 1.038 24 22 .84 .823 1.19 1.215 1.025 1011 208 91 107 76 92 .281
2 365 349 95 348 63 298 285 290 65 355 .39 0 -.547 .675 24 20 1.508 1.462 .663 .684 .262 799 208 90 106 93 109 -.547
3 350 333 8 249 272 261 266 254 .156 0 .462 11 5 .106 826 208 90 106 111 127
4 330 321 77 314 70 250 244 248 72 320 .453 0 -.097 .699 19 17 1.1 1.069 .909 .935 .43 791 208 90 106 129 145 -.097
5 332 320 181 1085 843 247 242 246 861 1107 .813 0 2.25 1.87 19 30 .215 .21 4.657 4.757 4.1 775 208 90 106 146 162 2.25
6 325 312 35 235 7 234 228 232 7 239 .224 0 -2.322 .409 11 5 5 5 .2 .2 .072 793 208 90 106 164 180 -2.322
7 319 307 29 225 6 226 219 223 6 229 .287 0 -2.273 .523 12 10 4.833 4.833 .207 .207 .154 779 208 90 106 182 198 -2.273
8 318 308 44 244 31 218 213 217 31 248 .247 0 -.505 .608 20 13 1.419 1.419 .705 .705 .149 799 208 89 105 199 215 -.505
9 314 293 18 216 20 205 196 200 20 220 .362 0 .152 .501 14 8 .9 .9 1.111 1.111 .354 815 208 89 105 217 233 .152
10 311 285 1802 2016 1814 206 202 206 1851 2057 .811 0 .039 .993 61 66 .993 .974 1.007 1.027 .834 802 208 89 105 235 251 .039
11 306 288 1747 2624 2415 215 209 213 2464 2677 0 0 .496 1.376 45 50 .723 .709 1.382 1.41 0 775 208 89 105 252 268 .496
12 299 286 2122 2955 2759 208 196 200 2815 3015 .919 0 .408 1.313 63 64 .769 .754 1.3 1.327 1.2 781 208 89 105 270 286 .408
13 300 287 181 352 167 195 185 188 171 359 .822 0 -.082 .644 32 25 1.084 1.058 .923 .945 .882 779 208 89 105 288 304 -.082
14 297 282 918 1075 894 186 181 184 912 1096 .881 0 -.009 .924 61 61 1.027 1.007 .974 .993 .904 799 208 88 104 305 321 -.009
15 288 268 29 205 36 177 169 172 37 209 .236 0 .351 .494 15 11 .806 .784 1.241 1.276 .315 815 208 88 104 323 339 .351
16 274 253 27 185 21 167 164 167 21 188 .178 0 -.363 .468 18 11 1.286 1.286 .778 .778 .122 812 208 88 104 341 357 -.363
17 274 252 16 159 166 160 163 162 .012 0 .439 12 6 .006 789 208 88 104 358 374
18 265 252 17 158 5 160 153 156 5 161 .054 0 -1.766 .495 12 8 3.4 3.4 .294 .294 .026 791 208 88 104 376 392 -1.766
19 263 247 19 157 8 156 149 152 8 160 .125 0 -1.248 .477 12 11 2.375 2.375 .421 .421 .062 779 208 88 104 394 410 -1.248
20 274 257 17 166 8 165 158 161 8 169 .356 0 -1.087 .5 14 11 2.125 2.125 .471 .471 .216 799 208 87 103 411 427 -1.087

Total number of rows: 18432

Table truncated, full table size 2294 Kbytes.




Supplementary data files not provided
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