|
| Status |
Public on Apr 13, 2016 |
| Title |
SA2_A2R1 |
| Sample type |
SRA |
| |
|
| Source name |
Fruit tissue
|
| Organism |
Citrus sinensis |
| Characteristics |
tissue: fruit
fruit stage: 142 DPA
cultivar: Succari
fruit acidity: Acidless
|
| Growth protocol |
Field grown trees
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Fruits were harvested, and total RNA was extracted using the ethanol- and LiCl-based protocol.
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Description |
Rep. 2
|
| Data processing |
Basecalls performed by BGI company.
Raw data were preprocessed by removing adaptor sequences and/or low quality reads, resulting in clean reads data.
These clean reads data were then mapped to the sweet orange reference sequences (version 2.0) published in 2013
Genome_build: Sweet orange version 2.0. http://citrus.hzau.edu.cn/orange/ Publication of reference genome: http://www.ncbi.nlm.nih.gov/pubmed/23179022
Supplementary_files_format_and_content: excel files were generated with geneID and raw count.
|
| |
|
| Submission date |
Feb 17, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Zhi-Liang Zheng |
| E-mail(s) |
zlzheng48@gmail.com
|
| Organization name |
Southwest University
|
| Department |
Citrus Research Institute
|
| Street address |
15 Ganjuchun
|
| City |
Beibei |
| State/province |
Chongqing |
| ZIP/Postal code |
400712 |
| Country |
China |
| |
|
| Platform ID |
GPL9256 |
| Series (1) |
| GSE78046 |
RNA-seq analysis of transcriptomes for developing fruits derived from sweet orange varieties |
|
| Relations |
| SRA |
SRX1590849 |
| BioSample |
SAMN04502886 |
