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Sample GSM2069 Query DataSets for GSM2069
Status Public on Jun 27, 2002
Title Blood B cells;anti-IgM+CD40L 24h
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Blood B cells;anti-IgM+CD40L 24h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Normal lymphoid subsets
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n078
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 208 199 31 96 38 62 58 90 60 150 .784 0 .953 .538 19 28 .816 .517 1.226 1.935 .616 990 225 112 129 57 74 .953
2 202 192 320 287 231 61 56 87 361 448 .897 0 .174 .663 50 53 1.385 .886 .722 1.128 .635 756 225 111 128 74 91 .174
3 201 189 439 2415 2357 62 58 90 3683 3773 .911 0 3.069 4.748 55 70 .186 .119 5.369 8.39 4.719 766 225 111 128 92 109 3.069
4 198 189 953 585 526 62 59 92 822 914 .927 0 -.213 .548 58 63 1.812 1.159 .552 .863 .504 756 225 111 128 109 126 -.213
5 205 196 6111 6172 6114 63 58 90 9553 9643 0 0 .645 .981 72 77 1 .64 1 1.563 0 771 225 111 128 127 144 .645
6 199 191 448 683 623 64 60 93 974 1067 .901 0 1.12 1.306 56 62 .719 .46 1.391 2.174 1.194 756 225 111 128 145 162 1.12
7 195 191 1180 1877 1816 65 61 95 2837 2932 .955 0 1.266 1.458 56 64 .65 .416 1.539 2.404 1.434 756 225 111 128 162 179 1.266
8 199 196 495 1038 977 65 61 95 1526 1621 .922 0 1.624 1.747 52 67 .507 .324 1.974 3.083 1.691 781 225 111 128 180 197 1.624
9 207 199 674 1065 1002 66 63 98 1566 1664 .916 0 1.216 1.423 66 75 .673 .43 1.487 2.323 1.339 756 225 111 128 198 215 1.216
10 241 206 430 434 373 68 61 95 583 678 .842 0 .439 .819 64 70 1.153 .738 .867 1.356 .698 756 225 111 128 215 232 .439
11 240 208 1509 1143 1083 67 60 93 1692 1785 .948 0 .165 .71 63 71 1.393 .892 .718 1.121 .68 781 225 111 128 233 250 .165
12 232 191 866 939 880 68 59 92 1375 1467 .907 0 .667 .957 69 75 .984 .63 1.016 1.588 .923 756 225 111 128 251 268 .667
13 200 180 41 117 60 62 57 89 93 182 .692 0 1.182 .696 23 33 .683 .441 1.463 2.268 .996 756 225 111 128 268 285 1.182
14 191 182 304 283 226 61 57 89 353 442 .872 0 .216 .719 49 60 1.345 .861 .743 1.161 .609 766 225 111 128 286 303 .216
15 192 183 555 3152 3095 63 57 89 4836 4925 0 0 3.123 4.527 53 67 .179 .115 5.577 8.714 0 756 225 111 128 303 320 3.123
16 193 183 875 560 503 61 57 89 786 875 .929 0 -.155 .521 55 58 1.74 1.113 .575 .898 .547 771 225 111 128 321 338 -.155
17 198 192 89 164 105 63 59 92 164 256 .605 0 .882 .749 31 46 .848 .543 1.18 1.843 .664 745 225 111 128 339 356 .882
18 203 195 171 317 260 62 57 89 406 495 .879 0 1.247 .959 33 48 .658 .421 1.52 2.374 1.254 731 225 111 128 356 373 1.247
19 205 194 4 68 14 58 54 84 22 106 .043 0 2.459 .48 12 29 .286 .182 3.5 5.5 .02 746 225 111 128 374 391 2.459
20 211 199 62 7 60 55 85 11 96 0 .328 10 20 0 720 225 111 128 392 409

Total number of rows: 18432

Table truncated, full table size 2161 Kbytes.




Supplementary data files not provided
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