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Sample GSM2070 Query DataSets for GSM2070
Status Public on Jun 27, 2002
Title Tonsil GC B || lc8n084
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Tonsil GC B
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Normal lymphoid subsets
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n084
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 56 52 38 71 40 35 31 35 46 81 .728 0 .276 .75 27 38 .95 .826 1.053 1.211 .822 1119 177 92 107 131 146 .276
2 59 53 260 372 342 34 30 34 393 427 .926 0 .596 1.246 59 68 .76 .662 1.315 1.512 1.168 919 177 91 106 148 163 .596
3 57 51 503 1202 1171 33 31 35 1346 1381 .918 0 1.42 2.367 71 76 .43 .374 2.328 2.676 2.08 915 177 91 106 166 181 1.42
4 56 51 1203 2094 2062 34 32 36 2370 2406 .925 0 .978 1.672 71 73 .583 .508 1.714 1.97 1.538 919 177 90 105 183 198 .978
5 65 53 6742 12264 12232 40 32 36 14060 14096 0 0 1.06 1.767 92 97 .551 .48 1.814 2.085 0 919 177 90 105 201 216 1.06
6 62 52 526 662 632 37 30 34 726 760 .921 0 .465 1.192 72 77 .832 .725 1.202 1.38 1.091 937 177 89 104 219 234 .465
7 53 50 977 1331 1304 30 27 31 1498 1529 .939 0 .617 1.261 63 73 .749 .652 1.335 1.533 1.23 919 177 89 104 236 251 .617
8 52 49 206 260 232 32 28 32 266 298 .825 0 .369 1 59 59 .888 .774 1.126 1.291 .933 906 177 89 104 254 269 .369
9 54 50 900 773 745 32 28 32 856 888 .933 0 -.072 .832 81 83 1.208 1.051 .828 .951 .752 919 177 88 103 271 286 -.072
10 53 50 659 541 513 30 28 32 589 621 .912 0 -.162 .794 85 88 1.285 1.119 .778 .894 .688 919 177 88 103 289 304 -.162
11 52 50 1789 2011 1983 30 28 32 2279 2311 .933 0 .349 1.142 84 90 .902 .785 1.108 1.274 1.032 928 177 87 102 307 322 .349
12 52 50 1250 1141 1113 30 28 32 1279 1311 .918 0 .033 .885 90 94 1.123 .977 .89 1.023 .809 906 177 87 102 324 339 .033
13 53 50 46 99 71 29 28 32 81 113 .848 0 .816 1.158 31 38 .648 .568 1.543 1.761 1.325 910 177 86 101 342 357 .816
14 56 52 521 622 593 31 29 33 681 714 .939 0 .386 1.081 68 79 .879 .765 1.138 1.307 1.012 909 177 86 101 359 374 .386
15 66 52 570 1228 1199 35 29 33 1378 1411 .93 0 1.274 2.092 65 77 .475 .414 2.104 2.418 1.881 918 177 86 101 377 392 1.274
16 61 50 241 440 411 35 29 33 472 505 .865 0 .97 1.455 46 58 .586 .511 1.705 1.959 1.322 918 177 85 100 395 410 .97
17 55 50 4 63 34 33 29 33 39 72 .151 0 3.285 1.333 15 42 .118 .103 8.5 9.75 .752 915 177 85 100 412 427 3.285
18 53 50 18 57 27 32 30 34 31 65 .502 0 .784 .8 18 32 .667 .581 1.5 1.722 .447 931 177 84 99 430 445 .784
19 53 51 6 40 10 31 30 34 11 45 .332 0 .874 1.189 20 27 .6 .545 1.667 1.833 .331 905 177 84 99 448 463 .874
20 54 53 37 8 30 29 33 9 42 .045 0 1.286 14 25 0 .062 929 177 83 98 465 480

Total number of rows: 18432

Table truncated, full table size 2135 Kbytes.




Supplementary data files not provided
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