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Sample GSM2072 Query DataSets for GSM2072
Status Public on Jun 27, 2002
Title DLCL-0034 || lc8n109
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0034
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n109
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 133 125 175 324 174 160 150 178 207 385 .8 0 .242 1.066 35 36 1.006 .845 .994 1.183 .751 1119 177 54 69 104 119 .242
2 126 118 66 199 59 153 140 166 70 236 .583 0 .085 .88 36 32 1.119 .943 .894 1.061 .564 896 177 54 69 121 136 .085
3 124 118 9 152 15 147 137 163 17 180 .03 0 .918 1.6 18 19 .6 .529 1.667 1.889 .04 896 177 54 69 139 154 .918
4 121 116 8 152 8 150 144 171 9 180 .066 0 .17 1.256 16 18 1 .889 1 1.125 .098 896 177 54 69 156 171 .17
5 121 115 1210 4103 3960 149 143 170 4714 4884 0 0 1.962 3.186 50 54 .306 .257 3.273 3.896 0 919 177 54 69 174 189 1.962
6 121 117 9 151 13 148 138 164 15 179 .131 0 .737 .951 18 23 .692 .6 1.444 1.667 .151 896 177 54 69 192 207 .737
7 120 118 7 163 31 145 132 157 37 194 .067 0 2.402 1.389 14 30 .226 .189 4.429 5.286 .088 896 177 54 69 209 224 2.402
8 128 116 6 139 10 145 129 153 12 165 .091 0 1 1.655 17 22 .6 .5 1.667 2 .111 919 177 54 69 227 242 1
9 129 115 6 160 25 146 135 160 30 190 0 2.322 2.036 14 23 .24 .2 4.167 5 896 177 54 69 245 260 2.322
10 144 125 1568 1576 1436 154 140 166 1710 1876 .868 0 .125 .924 75 76 1.092 .917 .916 1.091 .814 896 177 54 69 262 277 .125
11 151 133 4511 10423 10287 154 136 161 12247 12408 0 0 1.441 2.3 91 94 .439 .368 2.28 2.715 0 896 177 54 69 280 295 1.441
12 132 128 2741 3485 3353 142 132 157 3991 4148 .89 0 .542 1.252 78 77 .817 .687 1.223 1.456 1.102 896 177 54 69 297 312 .542
13 126 119 148 263 135 145 128 152 161 313 .789 0 .121 .93 44 41 1.096 .919 .912 1.088 .686 919 177 54 69 315 330 .121
14 125 115 964 982 855 144 127 151 1018 1169 .879 0 .079 .885 77 73 1.127 .947 .887 1.056 .797 896 177 54 69 333 348 .079
15 124 116 14 144 14 139 130 154 17 171 .07 0 .28 1.2 20 20 1 .824 1 1.214 .098 896 177 54 69 350 365 .28
16 124 116 12 147 15 140 132 157 18 175 .43 0 .585 1.979 12 18 .8 .667 1.25 1.5 .736 928 177 54 69 368 383 .585
17 124 116 17 141 10 138 131 155 12 167 .134 0 -.503 1.104 20 17 1.7 1.417 .588 .706 .148 919 177 54 69 386 401 -.503
18 127 120 1 144 10 142 134 159 12 171 0 3.585 .927 14 16 .1 .083 10 12 928 177 54 69 403 418 3.585
19 128 122 14 154 17 144 137 163 20 183 .125 0 .515 1 18 19 .824 .7 1.214 1.429 .136 937 177 54 69 421 436 .515
20 126 120 2 150 14 143 136 161 17 178 .191 0 3.087 1.557 16 23 .143 .118 7 8.5 .269 928 177 54 69 438 453 3.087

Total number of rows: 18432

Table truncated, full table size 2277 Kbytes.




Supplementary data files not provided
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