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Sample GSM2074 Query DataSets for GSM2074
Status Public on Jun 27, 2002
Title DLCL-0031 || lc8n108
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name DLCL-0031
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Diffuse Large B-Cell Lymphoma
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n108
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 133 121 93 199 81 156 118 99 68 167 .901 0 -.452 .826 33 25 1.148 1.368 .871 .731 .743 1119 177 63 78 83 98 -.452
2 120 111 66 191 89 121 102 85 75 160 .693 0 .184 1.033 40 41 .742 .88 1.348 1.136 .861 928 177 62 77 100 115 .184
3 141 112 4 104 2 128 102 85 2 87 .051 0 -1 .883 12 12 2 2 .5 .5 .045 928 177 62 77 118 133 -1
4 137 109 5 103 130 103 86 86 .421 0 .722 12 9 0 .456 928 177 62 77 135 150
5 110 105 1473 3705 3599 118 106 89 3024 3113 0 1.038 2.334 56 62 .409 .487 2.443 2.053 928 177 62 77 153 168 1.038
6 109 104 3 129 23 119 106 89 19 108 .499 0 2.663 1.382 13 15 .13 .158 7.667 6.333 1.501 928 177 62 77 170 185 2.663
7 110 104 6 107 2 112 105 88 1 89 .088 0 -2.585 .8 16 9 3 6 .333 .167 .078 928 177 62 77 188 203 -2.585
8 109 104 62 190 84 110 106 89 70 159 .514 0 .175 1.383 38 38 .738 .886 1.355 1.129 .878 928 177 62 77 205 220 .175
9 113 106 29 127 23 112 104 87 19 106 .386 0 -.61 .708 28 19 1.261 1.526 .793 .655 .381 928 177 62 77 223 238 -.61
10 137 114 1079 1661 1563 128 98 82 1313 1395 .9 0 .283 1.422 69 71 .69 .822 1.449 1.217 1.293 928 177 62 77 240 255 .283
11 175 119 3218 3537 3442 169 95 79 2893 2972 .929 0 -.154 1.071 80 83 .935 1.112 1.07 .899 .977 928 177 62 77 258 273 -.154
12 187 121 2073 2717 2621 179 96 80 2203 2283 .929 0 .088 1.263 71 71 .791 .941 1.264 1.063 1.172 928 177 62 77 275 290 .088
13 153 117 92 219 126 150 93 78 106 184 .889 0 .204 .943 38 37 .73 .868 1.37 1.152 1.289 928 177 62 77 293 308 .204
14 120 113 850 1300 1207 106 93 78 1014 1092 .91 0 .255 1.338 76 74 .704 .838 1.42 1.193 1.398 928 177 62 77 310 325 .255
15 122 115 18 131 36 112 95 79 31 110 .368 0 .784 .724 18 18 .5 .581 2 1.722 .564 928 177 62 77 328 343 .784
16 123 117 18 107 15 106 92 77 12 89 .142 0 -.585 .936 20 18 1.2 1.5 .833 .667 .171 928 177 62 77 345 360 -.585
17 131 123 8 93 117 100 84 78 .104 0 .583 17 7 .073 928 177 62 77 363 378
18 131 123 8 119 10 121 109 91 9 100 .178 0 .17 .602 19 14 .8 .889 1.25 1.125 .314 928 177 62 77 380 395 .17
19 127 120 96 111 99 83 80 .203 0 .55 10 9 0 .156 928 177 62 77 398 413
20 123 116 110 19 101 91 76 16 92 .183 0 1.486 11 19 0 .49 928 177 62 77 415 430

Total number of rows: 18432

Table truncated, full table size 2231 Kbytes.




Supplementary data files not provided
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