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Sample GSM2081 Query DataSets for GSM2081
Status Public on Jun 27, 2002
Title CLL-51 || lc8n119
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name CLL-51
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Chronic Lymphocytic Leukemia
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc8n119
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL176
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3211 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 166 145 36 239 52 206 187 198 56 254 .616 0 .637 1.254 25 23 .692 .643 1.444 1.556 1.056 1129 177 81 96 40 55 .637
2 163 144 67 241 63 195 178 189 67 256 .77 0 0 1.08 34 25 1.063 1 .94 1 .765 919 177 80 95 57 72 0
3 154 149 174 2 177 172 182 3 185 .1 0 1.41 10 7 0 .091 906 177 80 95 75 90
4 158 153 14 161 168 162 172 171 .042 0 .672 13 6 .029 919 177 79 94 92 107
5 160 151 66 303 144 166 159 169 153 322 .703 0 1.213 1.391 18 19 .458 .431 2.182 2.318 1.585 906 177 79 94 110 125 1.213
6 160 150 8 165 7 166 158 168 7 175 .109 0 -.193 .89 14 9 1.143 1.143 .875 .875 .089 919 177 78 93 127 142 -.193
7 157 146 22 162 7 163 155 164 8 172 .27 0 -1.459 .709 22 7 3.143 2.75 .318 .364 .199 906 177 78 93 145 160 -1.459
8 161 152 12 161 3 169 158 168 3 171 .084 0 -2 .805 14 8 4 4 .25 .25 .077 928 177 77 92 162 177 -2
9 160 150 16 164 6 169 158 168 6 174 .128 0 -1.415 1.03 16 10 2.667 2.667 .375 .375 .112 919 177 77 92 180 195 -1.415
10 157 149 1382 1160 1008 160 152 161 1073 1234 .888 0 -.365 .697 61 57 1.371 1.288 .729 .776 .657 906 177 77 92 197 212 -.365
11 160 152 5262 6421 6269 160 152 161 6669 6830 0 0 .342 1.231 81 84 .839 .789 1.191 1.267 0 919 177 76 91 215 230 .342
12 162 153 3158 3139 2982 164 157 167 3172 3339 .931 0 .006 .942 75 72 1.059 .996 .944 1.004 .891 906 177 76 91 232 247 .006
13 449 161 10 188 20 309 168 178 22 200 .376 0 1.138 1.52 15 12 .5 .455 2 2.2 .468 899 177 75 90 250 265 1.138
14 453 162 1899 3962 3794 314 168 178 4036 4214 0 0 1.088 2.115 72 76 .501 .471 1.998 2.125 0 896 177 75 90 267 282 1.088
15 166 159 47 245 80 179 165 175 85 260 .764 0 .855 1.472 19 17 .588 .553 1.702 1.809 1.54 929 177 74 89 285 300 .855
16 176 160 170 3 188 167 177 3 180 0 2.167 7 8 0 918 177 74 89 302 317
17 168 156 24 197 34 178 163 173 36 209 .183 0 .585 1.462 18 23 .706 .667 1.417 1.5 .143 918 177 74 89 320 335 .585
18 154 150 3 157 2 163 155 164 3 167 .089 0 0 .706 14 6 1.5 1 .667 1 .07 918 177 73 88 338 353 0
19 158 154 155 1 162 154 163 1 164 .01 0 .861 7 5 0 .01 905 177 73 88 355 370
20 162 153 8 173 19 159 154 163 21 184 .203 0 1.392 1.053 15 16 .421 .381 2.375 2.625 .189 918 177 72 87 373 388 1.392

Total number of rows: 18432

Table truncated, full table size 2258 Kbytes.




Supplementary data files not provided
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